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Basic information

CohesinDB ID: CDBP00419894

Locus: chr21-41089578-41089986

Data sourse: ENCSR000BLD, GSE72082, GSE86191, GSE105028, GSE25021, GSE97394

Cell type: MCF-7, H1-hESC, HCT-116, H9-hESC, HUES64

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 59%, "14_ReprPCWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, ZFX, STAT1, ERG3, JUNB, MYC, RAD21, GABPA, STAT3, FOS, ZNF736, CEBPB, CREB1, EZH2, NFKB1, JUN, CTCF, INTS13, SCRT1, NCOR2, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): B3GALT5,GET1-SH3BGR,SH3BGR,BACE2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000285815, ENSG00000185437, ENSG00000183778, ENSG00000182240,

eachgene

Deatailed information for cohesin site CDBP00419894