Browse_each

Basic information

CohesinDB ID: CDBP00419896

Locus: chr21-41102166-41102943

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 41%, "15_Quies": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, MYCN, TOP2A, ZFX, POU4F2, XBP1, NME2, ZBTB48, WT1, TET2, SUZ12, DDX5, ERG, YY1, RELA, ZNF19, KDM1A, CREBBP, ATF3, MYC, ZNF25, SMARCA4, SP140, GRHL3, GATA3, SMC3, ATF2, TAL1, GATA1, HNRNPH1, MED1, NR2F2, TRIM28, KMT2A, EZH2, LMO2, ESR1, OCA2, ZNF334, EBF3, CTCF, TCF12, SPI1, NR4A1, AR, GATA6, PAX8, GATA2, FLI1, NOTCH3, BRD4, ZNF605, MAZ, NCOA2, STAG1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 7

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00419896