- Basic information
- CohesinDB ID: CDBP00419902
- Locus: chr21-41118522-41118980
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 61%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, POU5F1, SOX2, ZFX, SMAD3, FOXA1, HOXB13, ERG, KDM1A, MYC, RUNX2, GRHL3, PBX4, GABPA, STAT3, MAX, MITF, RCOR1, PLAG1, CEBPB, SNAI2, ZMYM3, EZH2, ESR1, USF2, TCF12, USF1, NIPBL, BAF155, BCL11A, HNF4A, AR, RBM25, ZNF146, RAD51, RNF2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop:
chr21:40143283-40145087~~chr21:41121049-41122875,
chr21:41121049-41122875~~chr21:41133208-41135081,
chr21:41121201-41122984~~chr21:41459735-41461936,
chr21:41121223-41122885~~chr21:41206719-41208416,
chr21:41121223-41122885~~chr21:41777107-41779197,
chr21:41121224-41122886~~chr21:41459709-41461697,
chr21:41121225-41122896~~chr21:41459683-41461603,
chr21:41121237-41123266~~chr21:41459580-41461716,
chr21:41121239-41122909~~chr21:41459867-41462122,
chr21:41121239-41122909~~chr21:41609888-41611281,
chr21:41121243-41122932~~chr21:41777482-41779192,
chr21:41121256-41122881~~chr21:41777480-41779175,
chr21:41121260-41122868~~chr21:41167149-41169803,
chr21:41121260-41122868~~chr21:41459775-41461692,
chr21:41121357-41122645~~chr21:41460157-41461407,