- Basic information
- CohesinDB ID: CDBP00419907
- Locus: chr21-41132225-41137041
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, GSE97394, ENCSR217ELF, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, HSPC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, THP-1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 60% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.322
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 40%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, FOXA2, MYCN, TOP2A, ZFX, NME2, ZBTB48, WT1, DUX4, FOXA1, MAFF, SUZ12, BAHD1, CDK9, RELA, CREBBP, ATF3, PRDM1, GRHL3, ZIC2, HIF1A, ATF4, OTX2, GATA3, BATF, TAL1, STAT3, XRCC5, ZNF143, GATA1, CEBPG, CEBPB, NCOA3, TEAD1, TRIM28, MYB, ZNF544, TFAP2C, TP53, ESR1, OCA2, ZNF334, ELF3, CTCF, MAFK, MNT, AR, GATA2, SIX2, POU2F3, ATF7, SCRT1, SMC3, STAG1, AHR, EED
- Target gene symbol (double-evidenced CRMs): TMPRSS2,MX2,FAM3B,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 20
- Related genes and loops
- Related gene:
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
- Related loop:
chr21:40125000-40150000~~chr21:41125000-41150000,
chr21:40143203-40144858~~chr21:41133242-41135103,
chr21:40143218-40145094~~chr21:41133240-41135091,
chr21:40143238-40145160~~chr21:41133234-41134735,
chr21:40143267-40144892~~chr21:41133281-41134757,
chr21:40143268-40144900~~chr21:41133210-41134770,
chr21:40143283-40145087~~chr21:41133208-41135081,
chr21:40143286-40144881~~chr21:41133185-41134897,
chr21:40143311-40145530~~chr21:41133270-41135110,
chr21:40143361-40144725~~chr21:41133411-41134824,
chr21:40143375-40144769~~chr21:41133440-41134760,
chr21:40143385-40144715~~chr21:41133301-41134874,
chr21:40143385-40144767~~chr21:41133283-41134768,
chr21:40143388-40144776~~chr21:41133401-41134738,
chr21:40450000-40475000~~chr21:41125000-41150000,
chr21:41121049-41122875~~chr21:41133208-41135081,
chr21:41125000-41150000~~chr21:41350000-41375000,
chr21:41125000-41150000~~chr21:41425000-41450000,
chr21:41125000-41150000~~chr21:41450000-41475000,
chr21:41125000-41150000~~chr21:41575000-41600000,
chr21:41125000-41150000~~chr21:41600000-41625000,
chr21:41125000-41150000~~chr21:41700000-41725000,
chr21:41125000-41150000~~chr21:43600000-43625000,