- Basic information
- CohesinDB ID: CDBP00419911
- Locus: chr21-41140880-41142822
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE131606, GSE67783, GSE72082, GSE86191, GSE138405, GSE165895, GSE116868, GSE25021, GSE76893, GSE105028, GSE101921, GSE85526, GSE206145-NatGen2015, GSE206145, GSE68388, ENCSR703TNG, GSE126990, GSE115602
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, Hela-Kyoto, HEKn, MB157, HCAEC, DKO, HSPC, HFFc6, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 30%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, XBP1, FOXA1, MLL4, ATF3, CTCFL, PRDM1, ZNF444, SMARCE1, TP63, TEAD1, ETV1, SNAI2, LMO2, ESR1, JUN, CTCF, EP300, MNT, DPF2, RFX5, ZNF512B, TEAD4, TFAP2C, POU2F2, CHD8, MYCN, CTBP1, ZBTB48, ZSCAN5A, ERG, ASCL1, MYC, SMARCA4, RAD21, GRHL3, GABPA, STAT3, XRCC5, RCOR1, NFE2, ARNTL, NR3C1, CEBPB, ESRRA, KMT2A, CREB1, ZBTB11, EZH2, GRHL2, ZHX2, SPI1, EHF, HDAC2, SIX2, HCFC1, NCOA2, MYF5, RUNX1, SMC1A, CBX1, NKX2-2, SIN3A, ZFX, AFF4, SMAD3, TET2, CREBBP, RUNX2, PBX4, NFIB, ARNT, NRF1, FOS, MED1, TEAD3, ASH2L, AATF, SMC3, ELL2, NCOR2, STAG1, FOXA2, WT1, ZBTB33, RELA, JUNB, SP140, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, NCOA3, NR2F1, KDM5B, TP53, PKNOX1, NFKB1, MYOD1, ELF3, AR, PAX3-FOXO1, YAP1, EGLN2, HSF1, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): FAM3B,TMPRSS2,MX2,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops
- Related gene:
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
- Related loop:
chr21:40125000-40150000~~chr21:41125000-41150000,
chr21:40450000-40475000~~chr21:41125000-41150000,
chr21:41125000-41150000~~chr21:41350000-41375000,
chr21:41125000-41150000~~chr21:41425000-41450000,
chr21:41125000-41150000~~chr21:41450000-41475000,
chr21:41125000-41150000~~chr21:41575000-41600000,
chr21:41125000-41150000~~chr21:41600000-41625000,
chr21:41125000-41150000~~chr21:41700000-41725000,
chr21:41125000-41150000~~chr21:43600000-43625000,