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Basic information

CohesinDB ID: CDBP00419917

Locus: chr21-41153773-41154330

Data sourse: GSE67783

Cell type: HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 47%, "14_ReprPCWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PLRG1, ZNF207, ZNF263, TOP2A, ZFX, CTBP1, WT1, ZBTB48, ZSCAN5A, NONO, ZNF770, ZBTB33, SUZ12, ZKSCAN1, NEUROD1, ETS1, MYC, PRDM1, NFIB, ZNF444, SP140, FOXK2, ZNF8, STAT3, XRCC5, IKZF1, KLF4, ESRRA, NCOA3, ELF1, BCLAF1, ZNF670, ZNF512, RBM39, KDM5B, STAG1, ZNF687, ESR1, CTCF, DPF2, ZNF479, GATAD2B, ZNF366, HSF1, BRD4, ZNF512B, MAZ, SMC3, PDX1

Target gene symbol (double-evidenced CRMs): TMPRSS2,MX1,PRDM15,MX2,FAM3B

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000183844, ENSG00000183486, ENSG00000157601, ENSG00000184012, ENSG00000141956,

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Deatailed information for cohesin site CDBP00419917