- Basic information
- CohesinDB ID: CDBP00419918
- Locus: chr21-41159227-41159964
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 41%,
"14_ReprPCWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, CBX3, CEBPA, MYCN, POU5F1, RUNX1T1, ZFX, XBP1, WT1, SUZ12, RELA, JUNB, MYC, PBX4, GRHL3, CBFB, TAL1, FOS, ZNF736, CEBPG, CEBPB, NCOA3, CEBPD, TRIM28, CREB1, TFAP2C, EZH2, ESR1, ZNF334, NFKB1, SETDB1, JUN, CTCF, AR, ATF7, NOTCH3, BRD4, ZNF528, MAZ, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): FAM3B,TMPRSS2,PRDM15,MX2,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops