- Basic information
- CohesinDB ID: CDBP00419924
- Locus: chr21-41186135-41187378
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Data sourse: ENCSR000BTU, GSE67783, GSE86191, GSE111913, GSE25021
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Cell type: MCF-7, HCT-116, Ishikawa, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 49%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, XBP1, FOXA1, SUZ12, PBX2, ZFHX2, BMI1, ATF3, PRDM1, ATF4, TP63, ZNF320, ZNF736, TEAD1, TRIM28, ESR1, OCA2, CTCF, ZNF695, MNT, LMO1, ZNF528, ZNF280A, TEAD4, ZNF92, TFAP2C, GLIS1, POU2F2, CHD8, MYCN, CDK7, ZNF317, ZBTB48, DUX4, NONO, SRF, ERG2, ERG, ASCL1, MYC, ZNF84, SMARCA4, RFX1, GRHL3, PROX1, NKX2-1, GABPA, APC, STAT3, XRCC5, RCOR1, NR3C1, CEBPB, ZNF750, GRHL2, SPI1, IRF1, RUNX1, CEBPA, SIN3A, ZFX, ERG3, CREBBP, RARA, NOTCH1, ZNF133, RUNX2, PBX4, ARNT, ZNF48, CBFA2T3, CDK8, MED1, MYB, ZNF680, KLF9, SETDB1, STAT5A, BCL11A, TFAP2A, POU2F3, SMC3, STAG1, FOXA2, BRF2, WT1, ZNF30, CDK9, HOXB13, YY1, RELA, SP140, ZIC2, HIF1A, GATA3, TAL1, MAX, NRIP1, GATA1, ZNF143, CBX2, KLF4, CEBPG, NCOA3, TP53, PKNOX1, AR, ZNF579, NOTCH3, BRD4, SCRT1
- Target gene symbol (double-evidenced CRMs): PRDM15,FAM3B,RIPK4,BACE2,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 36
- Number of somatic mutations (non-coding): 12
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000157601,
ENSG00000183421,
ENSG00000141956,
- Related loop:
chr21:40875000-40900000~~chr21:41175000-41200000,
chr21:41075000-41100000~~chr21:41175000-41200000,
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41175000-41200000~~chr21:41425000-41450000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41775000-41800000,