- Basic information
- CohesinDB ID: CDBP00419927
- Locus: chr21-41200720-41201085
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 57%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, CHD8, NCOA3, MYC, FLI1, ZFX, XBP1, SP140, WT1, ZBTB48, STAT1, GRHL3, ESR1, HIF1A, PRDM9, ARNT, SMC3, CTCF, ZNF143
- Target gene symbol (double-evidenced CRMs): C2CD2,UMODL1,SLC37A1,TMPRSS2,MX1,PRDM15,RSPH1,PDE9A,BACE2,RIPK4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
- Related loop:
chr21:40875000-40900000~~chr21:41175000-41200000,
chr21:40900000-40925000~~chr21:41200000-41225000,
chr21:40925000-40950000~~chr21:41200000-41225000,
chr21:41075000-41100000~~chr21:41175000-41200000,
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41175000-41200000~~chr21:41425000-41450000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41775000-41800000,
chr21:41200000-41225000~~chr21:41450000-41475000,
chr21:41200000-41225000~~chr21:41700000-41725000,
chr21:41200000-41225000~~chr21:41750000-41775000,
chr21:41200000-41225000~~chr21:41825000-41850000,
chr21:41200000-41225000~~chr21:41950000-41975000,
chr21:41200000-41225000~~chr21:42100000-42125000,
chr21:41200000-41225000~~chr21:42475000-42500000,
chr21:41200000-41225000~~chr21:42650000-42675000,