- Basic information
- CohesinDB ID: CDBP00419931
- Locus: chr21-41214800-41215219
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 48%,
"5_TxWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, TRP47, SMC1A, BCL6, ZSCAN5D, MYCN, TBL1X, SIRT6, KDM4C, ZFX, WT1, ZBTB48, FOXA1, TET2, ERG3, ZNF823, ZKSCAN1, KDM1A, YY1, RELA, ERG, ATF3, MCM5, MYC, SP140, NRF1, GRHL3, TAL1, TP63, CHD1, TEAD1, TRIM28, MYB, KDM6B, ZNF3, OCA2, GRHL2, ZNF334, CTCF, JUN, ZNF664, AR, REST, RBM25, HSF1, BRD4, AATF, HCFC1R1, SMC3, NCOR2, STAG1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): SLC37A1,RIPK4,PDE9A,TMPRSS2,RSPH1,PRDM15,BACE2,MX1,C2CD2,UMODL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
- Related loop:
chr21:40900000-40925000~~chr21:41200000-41225000,
chr21:40925000-40950000~~chr21:41200000-41225000,
chr21:41200000-41225000~~chr21:41450000-41475000,
chr21:41200000-41225000~~chr21:41700000-41725000,
chr21:41200000-41225000~~chr21:41750000-41775000,
chr21:41200000-41225000~~chr21:41825000-41850000,
chr21:41200000-41225000~~chr21:41950000-41975000,
chr21:41200000-41225000~~chr21:42100000-42125000,
chr21:41200000-41225000~~chr21:42475000-42500000,
chr21:41200000-41225000~~chr21:42650000-42675000,