- Basic information
- CohesinDB ID: CDBP00419939
- Locus: chr21-41235811-41236966
-
Data sourse: GSE86191, GSE138405, GSE111913, ENCSR000EDE, GSE126990, GSE108869, ENCSR000ECS
-
Cell type: RT-112, HeLa-S3, Hela-Kyoto, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 38%,
"15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, XBP1, FOXA1, ZFHX2, NFIC, PRDM1, MORC2, TP63, LMO2, ESR1, OCA2, USF2, JUN, TCF12, CTCF, BAF155, EP300, GATA6, RFX5, DEK, GTF2F1, TFAP2C, GLIS1, POU2F2, CHD8, POU5F1, MYCN, TOP2A, CDK7, DUX4, ZBTB48, STAT1, ERG2, TBP, ZNF300, ERG, ASCL1, MYC, RAD21, ZNF24, GRHL3, GABPA, STAT3, NKX3-1, RCOR1, NR3C1, ESRRA, CEBPB, CREB1, GATA2, MXI1, NCOA2, RUNX1, AFF4, ZFX, SMAD3, ERG3, SMARCC1, CDK6, NFIB, ARNT, SOX11, FOXM1, FOS, PIAS1, USF1, ZHX1, FOXP1, SMC3, ELL2, STAG1, NELFA, TRP47, CREM, CHD2, ZSCAN16, WT1, CDK9, HOXB13, RELA, SP140, HIF1A, TAL1, MAX, NRIP1, ZNF143, SP7, NCOA3, TCF7L2, TP53, EGR2, BRD2, ELF3, BHLHE40, AR, RXR, HSF1, BRD4, JUND, BRCA1
- Target gene symbol (double-evidenced CRMs): BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 33
- Number of somatic mutations (non-coding): 10
- Related genes and loops