- Basic information
- CohesinDB ID: CDBP00419940
- Locus: chr21-41237171-41237412
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Data sourse: GSE206145-NatGen2015, GSE206145-GSE177045
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Cell type: MCF-7, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 42%,
"5_TxWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, XBP1, FOXA1, ZFHX2, NFIC, PRDM1, MORC2, TP63, LMO2, ESR1, OCA2, USF2, JUN, TCF12, CTCF, BAF155, EP300, GATA6, RFX5, DEK, GTF2F1, TFAP2C, GLIS1, POU2F2, CHD8, POU5F1, MYCN, TOP2A, CDK7, DUX4, ZBTB48, STAT1, ERG2, TBP, ZNF300, ERG, ASCL1, MYC, RAD21, ZNF24, GRHL3, GABPA, STAT3, NKX3-1, RCOR1, NR3C1, ESRRA, CEBPB, CREB1, GATA2, MXI1, NCOA2, RUNX1, AFF4, ZFX, SMAD3, ERG3, SMARCC1, CDK6, NFIB, ARNT, SOX11, FOXM1, FOS, PIAS1, USF1, ZHX1, FOXP1, SMC3, ELL2, STAG1, NELFA, TRP47, CREM, CHD2, ZSCAN16, WT1, CDK9, HOXB13, RELA, SP140, HIF1A, TAL1, MAX, NRIP1, ZNF143, SP7, NCOA3, TCF7L2, TP53, EGR2, BRD2, ELF3, BHLHE40, AR, RXR, HSF1, BRD4, JUND, BRCA1
- Target gene symbol (double-evidenced CRMs): BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 2
- Related genes and loops