- Basic information
- CohesinDB ID: CDBP00419941
- Locus: chr21-41238064-41238455
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Data sourse: GSE206145-NatGen2015, GSE111913, GSE86191
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Cell type: RT-112, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 39%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, TRP47, SMC1A, AGO1, MYCN, ZFX, XBP1, GTF2B, ZBTB48, WT1, FOXA1, TET2, SMARCC1, YY1, RELA, CREBBP, NEUROD1, AHR, MYC, ZIC2, ARNT, OTX2, MED1, CBX2, NR3C1, TEAD1, CREB1, ESR1, CTCF, AR, ZNF146, HSF1, NOTCH3, BRD4, MAZ, TEAD4, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 5
- Related genes and loops