- Basic information
- CohesinDB ID: CDBP00419943
- Locus: chr21-41240969-41241895
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Data sourse: GSE116344, GSE67783
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Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 37%,
"5_TxWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NELFA, FOXA2, POU5F1, SIRT6, MYCN, AFF4, ZFX, PAF1, WT1, FOXA1, DDX5, HOXB13, YY1, RELA, CREBBP, NFIC, MYC, SP140, GRHL3, HIF1A, MORC2, STAT3, MAX, FOXM1, SUPT5H, GATA1, MITF, PRDM14, NR3C1, KLF5, TRIM28, SCRT2, STAG1, EZH2, ESR1, GRHL2, TBX5, MYOD1, CTCF, EP300, NKX2-5, ZNF479, SIX2, EGR1, BRD4, SCRT1, ZNF490, MAZ, TEAD4, ELL2, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 78
- Number of somatic mutations (non-coding): 20
- Related genes and loops