- Basic information
- CohesinDB ID: CDBP00419950
- Locus: chr21-41259960-41260770
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 46%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, POU2F2, NANOG, PGR, ZSCAN5D, ZNF263, CEBPA, ZFX, XBP1, ZBTB48, WT1, FOXA1, ZNF770, HOXB13, ERG, YY1, RELA, MYC, RUNX2, BRG1, HIF1A, MORC2, SMC3, NRIP1, NKX3-1, SUPT5H, MED1, TLE3, CEBPB, NCOA3, CEBPD, CREB1, PIAS1, EZH2, ESR1, GRHL2, ZNF334, CTCF, ARRB1, BAF155, AR, GATA2, ARID1A, RB1, NOTCH3, BRD4, FOXP1, E2F1, NCOA2, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops