- Basic information
- CohesinDB ID: CDBP00419953
- Locus: chr21-41279309-41286918
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, BGO3, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 79% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.156
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 38%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, SOX2, XBP1, FOXA1, ATF3, MORC2, TP63, SAP30, ESR1, OCA2, CTCF, JUN, TEAD4, EED, POU2F2, ZSCAN5D, MYCN, POU5F1, TOP2A, ZBTB48, DUX4, STAT1, ZSCAN5A, ERG2, OGG1, MYC, RAD21, DNMT3B, NR3C1, CEBPB, ESRRA, CREB1, EZH2, GRHL2, GATA2, SIX2, NCOA2, RUNX1, SMC1A, SIRT6, ZFX, TET2, ERG3, ZNF384, RUNX2, ZNF184, ARNT, SOX11, ATF2, FOS, SUPT5H, MED1, SCRT2, KLF9, ZNF41, GSPT2, HNF4A, SMC3, STAG1, TBL1X, PAF1, GTF2B, WT1, HOXB13, YY1, RELA, SP140, HIF1A, OTX2, TAL1, ZNF143, CBX2, CEBPG, NCOA3, NR2F1, NEUROG2, TP53, ZNF334, MYOD1, EGR2, AR, EGLN2, HSF1, NOTCH3, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): RIPK4,UMODL1,MX1,FAM3B,MX2,BACE2,TMPRSS2,C2CD2,PRDM15
- Function elements
- Human SNPs: Cognitive_ability,_years_of_educational_attainment_or_schizophrenia_(pleiotropy)
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 40
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
- Related loop:
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41275000-41300000~~chr21:41375000-41400000,
chr21:41275000-41300000~~chr21:41425000-41450000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41275000-41300000~~chr21:41825000-41850000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41281909-41284412~~chr21:41459991-41461684,
chr21:41281909-41284412~~chr21:41816016-41818176,
chr21:41282093-41284330~~chr21:41459685-41461551,
chr21:41282093-41284330~~chr21:41815923-41818297,
chr21:41282099-41284639~~chr21:41459664-41461786,
chr21:41282110-41284722~~chr21:41459434-41461559,
chr21:41282125-41284316~~chr21:41459620-41461739,
chr21:41282125-41284316~~chr21:41611455-41613750,
chr21:41282133-41284375~~chr21:41459735-41461936,
chr21:41282133-41284375~~chr21:41609804-41611416,
chr21:41282147-41284710~~chr21:41459580-41461716,
chr21:41282155-41284690~~chr21:41459307-41461849,
chr21:41282193-41284644~~chr21:41459685-41461836,
chr21:41282193-41284644~~chr21:41777403-41779683,
chr21:41282193-41284644~~chr21:41815835-41818294,
chr21:41282205-41284637~~chr21:41459476-41461719,
chr21:41282205-41284637~~chr21:41815737-41818351,
chr21:41282223-41284326~~chr21:41459674-41461814,
chr21:41282224-41284707~~chr21:41459487-41461757,
chr21:41282224-41284707~~chr21:41609800-41611357,
chr21:41282224-41284707~~chr21:41815737-41818316,
chr21:41282240-41284443~~chr21:41459800-41461731,
chr21:41282245-41284720~~chr21:41609880-41611334,
chr21:41282245-41284720~~chr21:41611373-41613994,
chr21:41282249-41284316~~chr21:41359432-41361272,
chr21:41282253-41284285~~chr21:41359487-41361156,
chr21:41282253-41284285~~chr21:41459934-41461665,
chr21:41282268-41284276~~chr21:41459775-41461692,
chr21:41282269-41284303~~chr21:41459918-41461732,
chr21:41282270-41284305~~chr21:41459683-41461603,
chr21:41282271-41284327~~chr21:41609719-41611366,
chr21:41282271-41284327~~chr21:41815837-41818350,
chr21:41282272-41284307~~chr21:41459825-41461718,
chr21:41282272-41284702~~chr21:41459656-41461660,
chr21:41282272-41284702~~chr21:41777480-41779175,
chr21:41282272-41284702~~chr21:41815747-41818270,
chr21:41282282-41284347~~chr21:41459502-41461722,
chr21:41282282-41284347~~chr21:41777107-41779197,
chr21:41282283-41284648~~chr21:41459867-41462122,
chr21:41282283-41284648~~chr21:41609888-41611281,
chr21:41282284-41284738~~chr21:41410569-41412490,
chr21:41282284-41284738~~chr21:41459709-41461697,
chr21:41282284-41284738~~chr21:41611517-41613753,
chr21:41282285-41284324~~chr21:41359525-41361220,
chr21:41282285-41284324~~chr21:41609938-41611367,
chr21:41282295-41284287~~chr21:41459726-41462162,
chr21:41282304-41284355~~chr21:41359414-41361284,
chr21:41282314-41285188~~chr21:41459631-41461654,
chr21:41282316-41284371~~chr21:41459776-41461623,
chr21:41282331-41284316~~chr21:41459997-41461595,
chr21:41282376-41284318~~chr21:41459958-41461683,
chr21:41282419-41284353~~chr21:41459674-41461670,
chr21:41282419-41284353~~chr21:41609817-41611331,
chr21:41282438-41284308~~chr21:41459812-41461705,
chr21:41282441-41284676~~chr21:41459795-41461716,
chr21:41282441-41284676~~chr21:41815802-41818289,
chr21:41282471-41284284~~chr21:41359635-41361174,
chr21:41282471-41284284~~chr21:41459737-41461655,
chr21:41282471-41284317~~chr21:41459729-41461718,
chr21:41282499-41284371~~chr21:41460072-41461492,
chr21:41282503-41284621~~chr21:41815822-41818125,
chr21:41282554-41284321~~chr21:41359636-41362143,
chr21:41282596-41284333~~chr21:41777823-41779000,
chr21:41282688-41284172~~chr21:41816062-41818083,