- Basic information
- CohesinDB ID: CDBP00419954
- Locus: chr21-41287349-41287624
-
Data sourse: ENCSR703TNG, GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 58%,
"15_Quies": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, PAX7, TLE3, RUNX1T1, FOXA1, ZNF334, HOXB13, SPI1
- Target gene symbol (double-evidenced CRMs): UMODL1,BACE2,C2CD2,MX2,MX1,TMPRSS2,RIPK4,PRDM15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
- Related loop:
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41275000-41300000~~chr21:41375000-41400000,
chr21:41275000-41300000~~chr21:41425000-41450000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41275000-41300000~~chr21:41825000-41850000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41281909-41284412~~chr21:41459991-41461684,
chr21:41281909-41284412~~chr21:41816016-41818176,
chr21:41282093-41284330~~chr21:41459685-41461551,
chr21:41282093-41284330~~chr21:41815923-41818297,
chr21:41282099-41284639~~chr21:41459664-41461786,
chr21:41282110-41284722~~chr21:41459434-41461559,
chr21:41282125-41284316~~chr21:41459620-41461739,
chr21:41282125-41284316~~chr21:41611455-41613750,
chr21:41282133-41284375~~chr21:41459735-41461936,
chr21:41282133-41284375~~chr21:41609804-41611416,
chr21:41282147-41284710~~chr21:41459580-41461716,
chr21:41282155-41284690~~chr21:41459307-41461849,
chr21:41282193-41284644~~chr21:41459685-41461836,
chr21:41282193-41284644~~chr21:41777403-41779683,
chr21:41282193-41284644~~chr21:41815835-41818294,
chr21:41282205-41284637~~chr21:41459476-41461719,
chr21:41282205-41284637~~chr21:41815737-41818351,
chr21:41282223-41284326~~chr21:41459674-41461814,
chr21:41282224-41284707~~chr21:41459487-41461757,
chr21:41282224-41284707~~chr21:41609800-41611357,
chr21:41282224-41284707~~chr21:41815737-41818316,
chr21:41282240-41284443~~chr21:41459800-41461731,
chr21:41282245-41284720~~chr21:41609880-41611334,
chr21:41282245-41284720~~chr21:41611373-41613994,
chr21:41282249-41284316~~chr21:41359432-41361272,
chr21:41282253-41284285~~chr21:41359487-41361156,
chr21:41282253-41284285~~chr21:41459934-41461665,
chr21:41282268-41284276~~chr21:41459775-41461692,
chr21:41282269-41284303~~chr21:41459918-41461732,
chr21:41282270-41284305~~chr21:41459683-41461603,
chr21:41282271-41284327~~chr21:41609719-41611366,
chr21:41282271-41284327~~chr21:41815837-41818350,
chr21:41282272-41284307~~chr21:41459825-41461718,
chr21:41282272-41284702~~chr21:41459656-41461660,
chr21:41282272-41284702~~chr21:41777480-41779175,
chr21:41282272-41284702~~chr21:41815747-41818270,
chr21:41282282-41284347~~chr21:41459502-41461722,
chr21:41282282-41284347~~chr21:41777107-41779197,
chr21:41282283-41284648~~chr21:41459867-41462122,
chr21:41282283-41284648~~chr21:41609888-41611281,
chr21:41282284-41284738~~chr21:41410569-41412490,
chr21:41282284-41284738~~chr21:41459709-41461697,
chr21:41282284-41284738~~chr21:41611517-41613753,
chr21:41282285-41284324~~chr21:41359525-41361220,
chr21:41282285-41284324~~chr21:41609938-41611367,
chr21:41282295-41284287~~chr21:41459726-41462162,
chr21:41282304-41284355~~chr21:41359414-41361284,
chr21:41282314-41285188~~chr21:41459631-41461654,
chr21:41282316-41284371~~chr21:41459776-41461623,
chr21:41282331-41284316~~chr21:41459997-41461595,
chr21:41282376-41284318~~chr21:41459958-41461683,
chr21:41282419-41284353~~chr21:41459674-41461670,
chr21:41282419-41284353~~chr21:41609817-41611331,
chr21:41282438-41284308~~chr21:41459812-41461705,
chr21:41282441-41284676~~chr21:41459795-41461716,
chr21:41282441-41284676~~chr21:41815802-41818289,
chr21:41282471-41284284~~chr21:41359635-41361174,
chr21:41282471-41284284~~chr21:41459737-41461655,
chr21:41282471-41284317~~chr21:41459729-41461718,
chr21:41282499-41284371~~chr21:41460072-41461492,
chr21:41282503-41284621~~chr21:41815822-41818125,
chr21:41282554-41284321~~chr21:41359636-41362143,
chr21:41282596-41284333~~chr21:41777823-41779000,
chr21:41282688-41284172~~chr21:41816062-41818083,