- Basic information
- CohesinDB ID: CDBP00419955
- Locus: chr21-41289470-41289790
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Data sourse: ENCSR000BLD, ENCSR167MTG, GSE72082, ENCSR000BKV, GSE86191, GSE110061, GSE129526, GSE25021, GSE105028, GSE206145-NatGen2015, ENCSR054FKH, GSE121355, GSE131606, ENCSR000EDW
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Cell type: H1-hESC, Fibroblast, HCT-116, Hep-G2, DKO, K-562, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 50%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, POU5F1, MYCN, WT1, ZBTB33, GATAD1, SP5, RELA, RAD21, ARNT, HIF1A, ZNF48, ZNF614, XRCC5, PRDM14, TEAD3, GABPB1, CTCF, FOXP1, SMC3, AHR
- Target gene symbol (double-evidenced CRMs): TMPRSS2,MX2,RIPK4,C2CD2,BACE2,MX1,PRDM15,UMODL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
- Related loop:
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41275000-41300000~~chr21:41375000-41400000,
chr21:41275000-41300000~~chr21:41425000-41450000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41275000-41300000~~chr21:41825000-41850000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41282099-41284639~~chr21:41459664-41461786,
chr21:41282110-41284722~~chr21:41459434-41461559,
chr21:41282147-41284710~~chr21:41459580-41461716,
chr21:41282155-41284690~~chr21:41459307-41461849,
chr21:41282193-41284644~~chr21:41459685-41461836,
chr21:41282193-41284644~~chr21:41777403-41779683,
chr21:41282193-41284644~~chr21:41815835-41818294,
chr21:41282205-41284637~~chr21:41459476-41461719,
chr21:41282205-41284637~~chr21:41815737-41818351,
chr21:41282224-41284707~~chr21:41459487-41461757,
chr21:41282224-41284707~~chr21:41609800-41611357,
chr21:41282224-41284707~~chr21:41815737-41818316,
chr21:41282245-41284720~~chr21:41609880-41611334,
chr21:41282245-41284720~~chr21:41611373-41613994,
chr21:41282272-41284702~~chr21:41459656-41461660,
chr21:41282272-41284702~~chr21:41777480-41779175,
chr21:41282272-41284702~~chr21:41815747-41818270,
chr21:41282283-41284648~~chr21:41459867-41462122,
chr21:41282283-41284648~~chr21:41609888-41611281,
chr21:41282284-41284738~~chr21:41410569-41412490,
chr21:41282284-41284738~~chr21:41459709-41461697,
chr21:41282284-41284738~~chr21:41611517-41613753,
chr21:41282314-41285188~~chr21:41459631-41461654,
chr21:41282441-41284676~~chr21:41459795-41461716,
chr21:41282441-41284676~~chr21:41815802-41818289,
chr21:41282503-41284621~~chr21:41815822-41818125,