- Basic information
- CohesinDB ID: CDBP00419956
- Locus: chr21-41290198-41290717
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Data sourse: GSE67783, GSE86191, GSE116868, GSE105028, GSE206145-NatGen2015, GSE206145
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Cell type: RPE, Fibroblast, HCT-116, MB157, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 41%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFYB, TRP47, CHD8, FOXA2, MYCN, POU5F1, ZFX, TEAD4, XBP1, ZBTB48, WT1, ZSCAN5A, SMAD3, FOXA1, TET2, CBX8, ERG2, ETV5, YY1, RELA, ASCL1, OGG1, ATF3, RUNX2, MYC, SP140, GRHL3, ARNT, STAT3, PAX5, TAL1, ZNF143, ZNF736, NCOA3, TRIM28, EZH2, CTCF, GSPT2, AR, PAX8, GATA2, POU2F3, HSF1, RNF2, BRD4, PCGF2, SCRT1, SMC3, ZNF554, STAG1
- Target gene symbol (double-evidenced CRMs): MX2,UMODL1,C2CD2,MX1,PRDM15,RIPK4,TMPRSS2,BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
- Related loop:
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41275000-41300000~~chr21:41375000-41400000,
chr21:41275000-41300000~~chr21:41425000-41450000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41275000-41300000~~chr21:41825000-41850000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41275000-41300000~~chr21:42800000-42825000,