- Basic information
- CohesinDB ID: CDBP00419963
- Locus: chr21-41318233-41318586
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 39%,
"13_ReprPC": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ATF3, ZSCAN5D, MYCN, MYC, ZFX, SP140, HNRNPH1, ESR1, BRD4, ZBTB48, WT1, ZBTB26, ZNF334, MAZ, HNRNPLL, ZNF534, CTCF, ZNF143, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TMPRSS2,MX1,PRDM15,FAM3B,RIPK4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000183844,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
- Related loop:
chr21:41300000-41325000~~chr21:41425000-41450000,
chr21:41300000-41325000~~chr21:41450000-41475000,
chr21:41300000-41325000~~chr21:41500000-41525000,
chr21:41300000-41325000~~chr21:41575000-41600000,
chr21:41300000-41325000~~chr21:41600000-41625000,
chr21:41300000-41325000~~chr21:41700000-41725000,
chr21:41300000-41325000~~chr21:41750000-41775000,
chr21:41300000-41325000~~chr21:41775000-41800000,
chr21:41300000-41325000~~chr21:41800000-41825000,
chr21:41300000-41325000~~chr21:41825000-41850000,