- Basic information
- CohesinDB ID: CDBP00419964
- Locus: chr21-41319164-41319889
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Data sourse: GSE206145-GSE177045, GSE67783, GSE86191
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Cell type: MCF-7, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 55%,
"13_ReprPC": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, PGR, HMG20A, XBP1, HNF1A, FOXA1, HLF, SUZ12, RBFOX2, RXRB, PBX2, KDM3A, TFAP4, SIN3B, TSC22D4, THRB, ATF3, NFIC, ZFP64, MXD4, SMARCE1, PAX5, TP63, ZNF736, CDX2, ZNF467, TEAD1, ELF1, RBM39, KLF6, SNAI2, ETV1, ZNF217, ESR1, RCOR2, KLF10, OCA2, USF2, CTCF, TCF12, BAF155, ARID5B, EP300, LMO1, MNT, SOX5, GATA6, DPF2, L3MBTL4, DMAP1, IRF4, RFX3, TEAD4, FOXA3, ZNF175, GATAD2A, GTF2F1, RBPJ, TFAP2C, MLX, BRD1, MYCN, BRD3, CDK7, RUNX1T1, HHEX, CTBP1, ERF, POU5F1, ZBTB48, ZSCAN5A, NONO, GATAD1, SAP130, ERG2, ARID3A, TBP, HNF4G, ERG, PBX1, ASCL1, OGG1, ETS1, MYC, EZH1, SMARCA4, HOMEZ, RAD21, ARID1B, RXRA, GABPA, MCRS1, APC, XRCC5, ZNF614, NKX3-1, STAT3, IKZF1, MIER3, TCF25, NR2F6, DNMT3B, VDR, RCOR1, NR3C1, ESRRA, CEBPB, HNRNPH1, HNRNPL, KMT2A, CREB1, CCAR2, EZH2, TBL1XR1, GRHL2, ZNF652, TRPS1, GABPB1, ZHX2, HES1, TFE3, MIXL1, ZSCAN2, HBP1, PCBP1, HDAC2, GATA2, SSRP1, ZNF644, MXD3, DRAP1, ZGPAT, MXI1, NFIL3, NCOA2, RUVBL2, ETV5, PTBP1, RUNX1, THAP11, SMC1A, BCL6, CEBPA, CBX1, EZH2phosphoT487, SOX13, ZFX, FIP1L1, SIN3A, PCBP2, TET2, ERG3, TBX3, SP5, SMARCC1, MYBL2, RARA, ZBTB2, NOTCH1, CREBBP, ZNF384, NFYC, PRPF4, TAF15, GATA4, NRF1, ARNT, ATF2, PRDM9, ZNF48, SMAD4, ETV6, FOS, HMGXB4, CDK8, TGIF2, SMARCB1, MED1, TEAD3, CEBPD, MYB, KDM6B, PIAS1, U2AF1, ZMYM3, ZNF3, MBD1, RBM22, MAFK, SP1, TFAP2A, NIPBL, HNF4A, BCL11A, USF1, IKZF5, ARID2, ZNF479, ARID1A, REST, POU2F3, ASH2L, ZNF263, HNRNPLL, CTBP2, TCF3, FOXP1, AATF, STAG1, ETV4, SKI, TRP47, PPARG, FOXA2, AGO1, CREM, CHD2, TBL1X, MIER2, WT1, MAFF, ZBTB33, TCF7, CDK9, ZNF580, HOXB13, FOXO3, KDM1A, YY1, RELA, ZKSCAN1, MCM3, SP140, TCF4, HIF1A, ZIC2, GATA3, TAL1, MAX, NRIP1, ZNF143, AGO2, CEBPG, BCL11B, KLF4, NR2F2, TCF7L2, NR2F1, KDM5B, TP53, ZNF334, EGR2, ELF3, PHF5A, KAT8, BHLHE40, AR, ARID4B, NFKBIZ, TAF1, EGLN2, EGR1, HEXIM1, ZBTB26, HSF1, RNF2, JUND, BRD4, CUX1, MAZ, SMAD4.1D12, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): RIPK4,MX1,PRDM15,FAM3B,TMPRSS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000183844,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
- Related loop:
chr21:41300000-41325000~~chr21:41425000-41450000,
chr21:41300000-41325000~~chr21:41450000-41475000,
chr21:41300000-41325000~~chr21:41500000-41525000,
chr21:41300000-41325000~~chr21:41575000-41600000,
chr21:41300000-41325000~~chr21:41600000-41625000,
chr21:41300000-41325000~~chr21:41700000-41725000,
chr21:41300000-41325000~~chr21:41750000-41775000,
chr21:41300000-41325000~~chr21:41775000-41800000,
chr21:41300000-41325000~~chr21:41800000-41825000,
chr21:41300000-41325000~~chr21:41825000-41850000,