- Basic information
- CohesinDB ID: CDBP00419981
- Locus: chr21-41363511-41364777
-
Data sourse: GSE206145-GSE177045, ENCSR338DUC, GSE67783, GSE86191, GSE111913, GSE206145, GSE103477, GSE25021, GSE115602
-
Cell type: MCF-7, MDM, RPE, HCT-116, Hep-G2, RT-112, HSPC, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"7_Enh": 22%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, PGR, SOX2, XBP1, FOXA1, HLF, RXRB, MLL4, KDM3A, TFAP4, SIN3B, HDGF, TSC22D4, LYL1, ATF3, NFIC, BMI1, ZFP64, ZNF362, ZBTB5, CHD7, CTCFL, RUNX3, CBFB, MXD4, PAX5, MITF, BACH2, MAF, JMJD1C, KLF5, ELF1, TRIM28, TEAD1, RBM39, BCLAF1, KLF6, INTS11, ZNF217, ESR1, OCA2, LMO2, SMAD5, ETV1, USF2, CTCF, TCF12, JUN, BAF155, ARID5B, EP300, LMO1, SND1, SOX5, SOX9, DPF2, DMAP1, IRF4, TRIM24, PRKDC, E2F1, SMC1, TEAD4, FOXA3, ZNF175, KMT2B, GATAD2A, GTF2F1, TFAP2C, RBPJ, EED, NANOG, POU2F2, BRD1, ZSCAN5D, MYCN, POU5F1, ZNF263, BRD3, CDK7, RUNX1T1, MTA2, TOP2A, ZBTB48, ZSCAN5A, STAT1, SRF, GATAD1, SAP130, NBN, ARID3A, TBP, HNF4G, ERG, PBX1, ASCL1, OGG1, ZNF341, ZNF597, MYC, MCM5, EOMES, SMARCA4, ETS1, RAD21, GRHL3, PROX1, NKX2-1, BATF3, GABPA, MCRS1, APC, XRCC5, ZNF614, NKX3-1, STAT3, IKZF1, RCOR1, HNRNPH1, DNMT3B, NR2F6, CD74, VDR, NR3C1, CEBPB, NFE2, TERF2, HNRNPL, STAT5B, KMT2A, CREB1, EZH2, TBL1XR1, BMPR1A, GRHL2, GABPB1, ZHX2, SPI1, MIXL1, TFE3, HBP1, IRF1, HDAC2, GATA2, ZNF644, GATAD2B, MXD3, ZSCAN29, FLI1, HCFC1, ZGPAT, MXI1, SMARCA5, DRAP1, RELB, HCFC1R1, NFIL3, ZNF316, ATF1, ETV5, PTBP1, RUNX1, THAP11, BCL6, SMC1A, CEBPA, SIRT6, NKX2-2, SIN3A, ZFX, SOX13, AFF4, POU4F2, SMAD3, TET2, ERG3, ZNF770, SP5, TRIM22, ZNF18, MEF2A, CREBBP, ZBTB2, RARA, NOTCH1, ZNF384, RUNX2, SMAD2, GATA4, ARNT, BACH1, SOX11, PBX4, TFDP1, ZNF48, PRDM9, SMAD4, ATF2, ETV6, FOXM1, PBX3, CHD1, CDK8, HMGXB4, TGIF2, FOS, MED1, SUPT5H, TEAD3, ZEB1, KDM6B, MYB, PML, PIAS1, SMAD1, TERF1, ZMYM3, MBD1, STAT5A, ZNF22, RBM22, USF1, SP1, TFAP2A, NIPBL, HNF4A, BCL11A, IKZF5, REST, ATF7, ASH2L, HNRNPLL, TCF3, BCOR, AATF, SMC3, STAT2, STAG1, MLLT1, NFATC3, SKI, TRP47, ZNF283, MEF2B, PPARG, AGO1, FOXA2, EBF1, CREM, ZNF207, E2F8, MIER2, MTA3, CHD2, WT1, ZBED1, GTF2B, HDAC6, MEIS1, MEF2C, TCF7, CDK9, ZNF580, ZKSCAN1, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, MCM3, SP140, TCF4, HIF1A, SKIL, ZFP36, BHLHE22, GATA3, BATF, TAL1, MAX, NRIP1, SPIB, ZNF143, AGO2, GATA1, PLAG1, KLF4, CEBPG, BCL11B, ZNF141, NCOA3, NR2F1, TCF7L2, KDM5B, TP53, PKNOX1, ZNF687, MED, ZNF334, NFKB1, T, ELF3, KAT8, BRD2, TBX21, BHLHE40, AR, ARID4B, NFKBIZ, ZBTB16, TAF1, YAP1, ZBTB40, EGLN2, ZBTB42, EGR1, RB1, MYNN, HSF1, IKZF2, ZBTB26, BRD4, JUND, RNF2, CUX1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TMPRSS2,BACE2,MX1,MX2,RIPK4,PRDM15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
- Related loop:
chr21:33400000-33425000~~chr21:41350000-41375000,
chr21:36525000-36550000~~chr21:41350000-41375000,
chr21:38775000-38800000~~chr21:41350000-41375000,
chr21:39175000-39200000~~chr21:41350000-41375000,
chr21:41125000-41150000~~chr21:41350000-41375000,
chr21:41150000-41175000~~chr21:41350000-41375000,
chr21:41282249-41284316~~chr21:41359432-41361272,
chr21:41282253-41284285~~chr21:41359487-41361156,
chr21:41282285-41284324~~chr21:41359525-41361220,
chr21:41282304-41284355~~chr21:41359414-41361284,
chr21:41282471-41284284~~chr21:41359635-41361174,
chr21:41282554-41284321~~chr21:41359636-41362143,
chr21:41350000-41375000~~chr21:41450000-41475000,
chr21:41350000-41375000~~chr21:41575000-41600000,
chr21:41350000-41375000~~chr21:41750000-41775000,
chr21:41350000-41375000~~chr21:41850000-41875000,
chr21:41350000-41375000~~chr21:43350000-43375000,
chr21:41361000-41363181~~chr21:41425246-41427778,
chr21:41367534-41370215~~chr21:41600536-41602815,
chr21:41368487-41370280~~chr21:41458627-41461687,
chr21:41368627-41370590~~chr21:41459655-41461711,
chr21:41368688-41370210~~chr21:41777426-41779194,
chr21:41368711-41370168~~chr21:41459737-41461655,
chr21:41368727-41370235~~chr21:41460007-41461704,