- Basic information
- CohesinDB ID: CDBP00420014
- Locus: chr21-41466276-41469670
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Data sourse: ENCSR000EFJ, ENCSR000BTU, ENCSR230ZWH, GSE67783, GSE86191, GSE138405, GSE165895, GSE116868, GSE111913, GSE206145, GSE206145-NatGen2015, GSE68388, GSE83726, GSE103477, GSE131606, GSE108869, ENCSR917QNE
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Cell type: MDM, RPE, Hela-Kyoto, Fibroblast, HCT-116, MB157, RH4, Ishikawa, HeLa-S3, IMR-90, HSPC, RT-112, Liver, HFFc6, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.822
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 23%,
"15_Quies": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, ZNF468, PGR, TRIM25, HMG20A, LCORL, E2F7, XBP1, FOXA1, SUZ12, RXRB, PBX2, MLL4, TFAP4, HNRNPK, HDGF, ATF3, NFIC, CTCFL, CHD7, ATF4, CBFB, TP63, MITF, ZNF320, ZNF736, MAF, KLF5, ELF1, TEAD1, ETV1, NFE2L2, RCOR2, ESR1, USF2, CTCF, TCF12, JUN, EP300, LMO1, SOX5, DPF2, PAX8, ZNF776, TEAD4, FOXA3, GATAD2A, RBPJ, TFAP2C, GLIS1, BRD1, MYCN, ZNF263, TOP2A, MTA2, ZNF317, ZBTB48, ZSCAN5A, STAT1, SAP130, ERG, OGG1, ETS1, MYC, SMARCA4, TOP1, RAD21, GRHL3, RXRA, PROX1, GABPA, STAT3, XRCC5, ZNF614, IKZF1, RCOR1, DNMT3B, NR2F6, NR3C1, CEBPB, ZNF750, CREB1, EZH2, GRHL2, GABPB1, ZHX2, SPI1, PCBP1, GATA2, GATAD2B, MXD3, FLI1, ZGPAT, SMARCA5, RELB, MRTFB, ZNF554, ETV5, RUNX1, BCL6, SMC1A, CEBPA, SIRT6, SOX13, ZFX, AFF4, SMAD3, PCBP2, TET2, ZNF770, ERG3, TRIM22, SMARCC1, TWIST1, CREBBP, ZNF384, PRPF4, RARA, NOTCH1, RUNX2, NFIB, DAXX, SOX11, PBX4, ARNT, ZNF48, SMAD4, PBX3, MAFB, NCAPH2, FOS, CHD1, MED1, TEAD3, ZEB1, KDM6B, SCRT2, PIAS1, SMAD1, ZNF3, MAFK, BCL11A, USF1, SP1, HNF4A, REST, ZNF479, ZBTB7A, ATF7, POU2F3, HNRNPLL, CTBP2, AATF, SMC3, ELL2, STAG1, NFATC3, TRP47, ZNF316, FOXA2, EBF1, SS18, ZNF600, ZSCAN16, WT1, MAFF, ZBTB33, CDK9, HOXB13, YY1, RELA, TARDBP, MCM3, SP140, ZIC2, SKIL, HIF1A, ZFP36, GATA3, TAL1, MAX, NRIP1, ZNF143, PLAG1, NCOA3, NR2F2, NR2F1, KDM5B, ZNF687, TP53, PKNOX1, ZNF334, MYOD1, EGR2, ELF3, BRD2, TBX21, BHLHE40, AR, RXR, HEXIM1, EGR1, TFIIIC, HSF1, IKZF2, BRD4, JUND, SCRT1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TMPRSS2,ABCG1,UMODL1,RIPK4,MX2,PRDM15,BACE2,FAM3B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 258
- Number of somatic mutations (non-coding): 59
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000177398,
ENSG00000160179,
- Related loop:
chr21:40125000-40150000~~chr21:41450000-41475000,
chr21:41121201-41122984~~chr21:41459735-41461936,
chr21:41121224-41122886~~chr21:41459709-41461697,
chr21:41121225-41122896~~chr21:41459683-41461603,
chr21:41121237-41123266~~chr21:41459580-41461716,
chr21:41121239-41122909~~chr21:41459867-41462122,
chr21:41121260-41122868~~chr21:41459775-41461692,
chr21:41121357-41122645~~chr21:41460157-41461407,
chr21:41125000-41150000~~chr21:41450000-41475000,
chr21:41150000-41175000~~chr21:41450000-41475000,
chr21:41200000-41225000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41281909-41284412~~chr21:41459991-41461684,
chr21:41282093-41284330~~chr21:41459685-41461551,
chr21:41282099-41284639~~chr21:41459664-41461786,
chr21:41282110-41284722~~chr21:41459434-41461559,
chr21:41282125-41284316~~chr21:41459620-41461739,
chr21:41282133-41284375~~chr21:41459735-41461936,
chr21:41282147-41284710~~chr21:41459580-41461716,
chr21:41282155-41284690~~chr21:41459307-41461849,
chr21:41282193-41284644~~chr21:41459685-41461836,
chr21:41282205-41284637~~chr21:41459476-41461719,
chr21:41282223-41284326~~chr21:41459674-41461814,
chr21:41282224-41284707~~chr21:41459487-41461757,
chr21:41282240-41284443~~chr21:41459800-41461731,
chr21:41282253-41284285~~chr21:41459934-41461665,
chr21:41282268-41284276~~chr21:41459775-41461692,
chr21:41282269-41284303~~chr21:41459918-41461732,
chr21:41282270-41284305~~chr21:41459683-41461603,
chr21:41282272-41284307~~chr21:41459825-41461718,
chr21:41282272-41284702~~chr21:41459656-41461660,
chr21:41282282-41284347~~chr21:41459502-41461722,
chr21:41282283-41284648~~chr21:41459867-41462122,
chr21:41282284-41284738~~chr21:41459709-41461697,
chr21:41282295-41284287~~chr21:41459726-41462162,
chr21:41282314-41285188~~chr21:41459631-41461654,
chr21:41282316-41284371~~chr21:41459776-41461623,
chr21:41282331-41284316~~chr21:41459997-41461595,
chr21:41282376-41284318~~chr21:41459958-41461683,
chr21:41282419-41284353~~chr21:41459674-41461670,
chr21:41282438-41284308~~chr21:41459812-41461705,
chr21:41282441-41284676~~chr21:41459795-41461716,
chr21:41282471-41284284~~chr21:41459737-41461655,
chr21:41282471-41284317~~chr21:41459729-41461718,
chr21:41282499-41284371~~chr21:41460072-41461492,
chr21:41300000-41325000~~chr21:41450000-41475000,
chr21:41350000-41375000~~chr21:41450000-41475000,
chr21:41368487-41370280~~chr21:41458627-41461687,
chr21:41368627-41370590~~chr21:41459655-41461711,
chr21:41368711-41370168~~chr21:41459737-41461655,
chr21:41368727-41370235~~chr21:41460007-41461704,
chr21:41450000-41475000~~chr21:41575000-41600000,
chr21:41450000-41475000~~chr21:41600000-41625000,
chr21:41450000-41475000~~chr21:41700000-41725000,
chr21:41450000-41475000~~chr21:41750000-41775000,
chr21:41450000-41475000~~chr21:41825000-41850000,
chr21:41450000-41475000~~chr21:42100000-42125000,
chr21:41450000-41475000~~chr21:42125000-42150000,
chr21:41450000-41475000~~chr21:42275000-42300000,