- Basic information
- CohesinDB ID: CDBP00420028
- Locus: chr21-41491203-41491494
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 40%,
"15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, MYCN, SOX2, ZFX, MIER2, XBP1, WT1, ZBTB48, FOXA1, TET2, DDX5, CDK9, HOXB13, HNF4G, ERG, YY1, RELA, ZNF384, ATF3, MYC, ZFP64, SP140, GRHL3, ARNT, SMC3, PRDM9, XRCC5, MED1, NR3C1, CEBPB, NCOA3, SCRT2, NR2F1, EZH2, ESR1, OCA2, CTCF, JUN, BCL11A, AR, REST, GATA2, HSF1, NCOR1, NOTCH3, SCRT1, FOXP1, MAZ, TEAD4, AHR
- Target gene symbol (double-evidenced CRMs): TMPRSS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops