- Basic information
- CohesinDB ID: CDBP00420031
- Locus: chr21-41499328-41499739
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Data sourse: GSE25021, GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 46%,
"15_Quies": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, NFIA, FOSL1, PGR, TRIM25, HMG20A, SOX2, HNF1A, XBP1, PATZ1, FOXA1, SUZ12, RBFOX2, RXRB, RING1B, PBX2, ZFHX2, KDM3A, TFAP4, ZBTB7B, THRB, ATF3, CTCFL, CHD7, ZNF444, ATF4, CBFB, MORC2, MXD4, ZNF189, SMARCE1, TP63, HDAC3, SFPQ, CDX2, MYOG, MAF, KLF5, TEAD1, ELF1, TRIM28, KLF6, SNAI2, ETV1, RBM39, RCOR2, ESR1, OCA2, ZNF217, LMO2, SAP30, CTCF, JUN, TCF12, EP300, BAF155, KLF1, MNT, SOX9, SOX5, GATA6, RYBP, PAX8, E2F6, TRIM24, ZNF423, ZNF512B, E2F1, TEAD4, FOXA3, GATAD2A, GTF2F1, RBPJ, TFAP2C, EED, GLIS1, JARID2, PDX1, NANOG, POU2F2, BRD1, CHD8, MYCN, ZNF263, POU5F1, KDM4C, CTBP1, ERF, ZBTB17, DUX4, ZBTB48, STAT1, ZSCAN5A, ZSCAN21, ZNF134, SAP130, ARID3A, ERG2, SP4, TBP, HNF4G, ERG, HOXC5, ASCL1, OGG1, MYC, ONECUT1, SMARCA4, KDM4A, RFX1, RAD21, GRHL3, PROX1, RXRA, NKX2-1, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, PRDM14, RB1, TERF2, NR2F6, HNRNPH1, VDR, INO80, NR3C1, CEBPB, ESRRA, HNRNPL, CREB1, ZNF560, EZH2, BMPR1A, GRHL2, ZNF652, TRPS1, GABPB1, PHF8, ZHX2, SPI1, TFE3, MIXL1, HDAC2, GATA2, INTS13, ZNF644, MXD3, ZNF121, FLI1, DRAP1, ZGPAT, NFIL3, NCOA2, ZIM3, ZNF554, ETV5, PTBP1, RUNX1, THAP11, CTNNB1, BCL6, SMC1A, CEBPA, CBX1, EZH2phosphoT487, NKX2-2, SOX13, ZFX, SIN3A, SIRT6, HDAC1, SMAD3, ZNF770, ERG3, SP5, SMARCC1, RARA, CREBBP, ZNF384, ZBTB2, TAF15, RUNX2, GATA4, OSR2, GR, SP3, NRF1, PBX4, ARNT, DAXX, ZNF48, SMAD4, MAFB, NCAPH2, FOS, CHD1, ZNF10, SP2, MED1, CSNK2A1, TEAD3, ZEB1, SPDEF, MYB, SCRT2, PIAS1, KDM6B, NR1H2, KLF9, MAFK, SP1, TFAP2A, NIPBL, HNF4A, IKZF5, REST, NKX2-5, ARID1A, ZBTB7A, ASH2L, HNRNPLL, PCGF2, PHIP, BCOR, FOXP1, MBD2, GLIS2, AATF, CTBP2, SMC3, NCOR2, STAG1, STAG2, PAX7, TRP47, CBFA2T2, PPARG, FOXA2, AGO1, CREM, RBBP5, HDAC6, TBL1X, MIER2, ZNF600, CHD2, WT1, ESR2, ZBTB33, TCF7, CDK9, ZNF580, HOXB13, KDM1A, YY1, RELA, TARDBP, JUNB, AHR, KAT2B, SP140, ZIC2, HIF1A, TCF4, PCGF1, GATA3, KLF15, TAL1, MAX, MAF1, NRIP1, ZNF143, GATA1, MTA1, AGO2, TLE3, CEBPG, KLF4, SP7, NCOA3, NR2F2, TCF7L2, NR2F1, KDM5B, TP53, ZNF687, PKNOX1, ZNF334, MYOD1, EGR2, ELF3, PHF5A, KAT8, BRD2, ARID4B, AR, TAF1, ZNF579, RXR, EGLN2, EGR1, HEXIM1, TFIIIC, ZBTB26, NCOR1, NOTCH3, BRD4, SCRT1, JUND, HSF1, CUX1, MAZ, RNF2, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): TMPRSS2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 45
- Number of somatic mutations (non-coding): 0
- Related genes and loops