- Basic information
- CohesinDB ID: CDBP00420046
- Locus: chr21-41529157-41529613
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Data sourse: GSE105028, GSE206145-GSE177045, GSE67783, GSE86191
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Cell type: MCF-7, HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 50%,
"15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, PGR, HMG20A, ZSCAN5C, NME2, XBP1, PATZ1, FOXA1, SUZ12, RXRB, KDM3A, TFAP4, ATF3, THRB, NFIC, ZFP64, RUNX1T1, ZBTB44, IKZF3, MXD4, ZNF189, MZF1, TP63, ZSCAN4, ZNF736, HDAC3, CDX2, SFPQ, ZNF629, TEAD1, TRIM28, ELF1, KLF6, ETV1, SNAI2, ESR1, OCA2, USF2, CTCF, JUN, TCF12, EP300, BAF155, L3MBTL4, LMO1, ZBTB20, SOX5, KLF1, GATA6, MNT, E2F6, PRDM4, IRF4, ZNF423, ZNF528, FOXA3, ZNF175, GATAD2A, PDX1, MLX, RBPJ, TFAP2C, GLIS1, NANOG, CHD8, BRD1, MYCN, BRD3, ZNF263, POU5F1, TOP2A, CTBP1, MTA2, ZBTB17, ZBTB48, ZSCAN21, ZNF317, ERF, NONO, GATAD1, DDX5, SAP130, ERG2, HNF4G, ERG, ZNF300, ZNF341, ETS1, MYC, HOMEZ, RAD21, GRHL3, RXRA, PROX1, GABPA, XRCC5, ZNF614, NKX3-1, IKZF1, MIER3, NR2F6, VDR, NR3C1, CEBPB, ESRRA, ZNF750, CREB1, CCAR2, EZH2, FEZF1, GRHL2, GABPB1, TFE3, MIXL1, HDAC2, GATA2, ZNF644, ZGPAT, HEXIM1-CDK9, NFIL3, NCOA2, ZNF554, ETV5, PTBP1, RUNX1, THAP11, BCL6, CEBPA, NKX2-2, SOX13, ZFX, TET2, TBX3, ERG3, SP5, SMARCC1, PRDM10, ZNF18, RARA, ZNF384, NOTCH1, ZNF35, PRPF4, CREBBP, OSR2, PBX4, ZNF48, PRDM9, SMAD4, ZEB2, ATF2, MED1, TEAD3, ZEB1, ZXDB, CEBPD, SCRT2, ZMYM3, MYB, PIAS1, TERF1, SETDB1, USF1, SP1, NIPBL, BCL11A, HNF4A, TFAP2A, IKZF5, REST, OVOL3, ARID1A, ASH2L, PHIP, GLIS2, FOXP1, PRDM6, AATF, SMC3, NCOR2, MLLT1, STAG1, TRP47, CBFA2T2, PPARG, FOXA2, TBL1X, MIER2, ZSCAN16, ZNF600, WT1, ZNF30, ZBTB33, TCF7, ZNF580, HOXB13, KDM1A, YY1, RELA, AHR, MCM3, SP140, TCF4, ZIC2, HIF1A, GATA3, TAL1, MAX, NRIP1, GATA1, TLE3, CEBPG, BCL11B, SP7, NCOA3, NR2F2, NR2F1, TCF7L2, PKNOX1, ZNF334, PHF5A, ELF3, KAT8, BRD2, ZNF843, BHLHE40, AR, ARID4B, NFKBIZ, RXR, EGLN2, EGR1, ZBTB26, HSF1, NCOR1, BRD4, SCRT1, JUND, CUX1, MAZ, DMAP1
- Target gene symbol (double-evidenced CRMs): MX1,TMPRSS2,FAM3B,MX2,BACE2
- Function elements
- Human SNPs: Prostate_cancer
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
- Related loop:
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41300000-41325000~~chr21:41500000-41525000,
chr21:41375000-41400000~~chr21:41525000-41550000,
chr21:41400000-41425000~~chr21:41500000-41525000,
chr21:41425000-41450000~~chr21:41525000-41550000,
chr21:41500000-41525000~~chr21:41600000-41625000,
chr21:41500000-41525000~~chr21:41750000-41775000,
chr21:41500000-41525000~~chr21:41775000-41800000,
chr21:41500000-41525000~~chr21:42250000-42275000,
chr21:41500000-41525000~~chr21:42300000-42325000,
chr21:41525000-41550000~~chr21:43200000-43225000,