- Basic information
- CohesinDB ID: CDBP00420051
- Locus: chr21-41537437-41538094
-
Data sourse: GSE86191, GSE116868, GSE25021, GSE68388
-
Cell type: MCF-7, MB157, HCT-116, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 47%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MBD3, NFIA, PGR, HMG20A, XBP1, FOXA1, SUZ12, ZFHX2, TFAP4, BMI1, NFIC, ATF3, CHD7, WDHD1, ZNF444, SMARCE1, KLF5, TEAD1, ELF1, KLF6, ETV1, ZNF217, ESR1, OCA2, JUN, TCF12, CTCF, BAF155, EP300, MNT, SOX9, SOX5, GATA6, DPF2, PAX8, TRIM24, ZNF674, ZNF512B, E2F1, NR5A2, TEAD4, FOXA3, GTF2F1, GATAD2A, TFAP2C, RBPJ, POU2F2, CHD8, NANOG, ZNF263, MYCN, TOP2A, KDM4C, CTBP1, ZBTB17, ZBTB48, UTX, SAP130, ERG, ZNF341, MYC, EZH1, RFX1, RAD21, GRHL3, PROX1, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, PRDM14, RCOR1, HNRNPH1, VDR, NR3C1, ESRRA, ZNF750, CEBPB, CREB1, EZH2, GRHL2, TRPS1, GABPB1, ZHX2, MIXL1, IRF1, HDAC2, GATA2, GATAD2B, MXD3, HCFC1, NCOA2, ETV5, RUNX1, CBX1, SMC1A, BCL6, CEBPA, SIN3A, ZFX, POU4F2, SOX13, SMAD3, TET2, ERG3, CREBBP, ZXDC, RARA, GR, ARNT, PBX4, ELK1, NFIB, ZNF48, PRDM9, SMAD4, ETV6, FOXM1, FOS, CHD1, CDK8, MED1, CSNK2A1, TEAD3, SCRT2, PIAS1, NR1H2, MAFK, NIPBL, TFAP2A, GSPT2, HNF4A, USF1, IKZF5, REST, ASH2L, CTBP2, MBD2, FOXP1, SMC3, STAG1, ZNF283, CBFA2T2, FOXA2, MTA3, RBBP5, WT1, CDK9, HOXB13, YY1, RELA, TARDBP, NEUROD1, SP140, TCF4, HIF1A, ZIC2, GATA3, TAL1, MAX, NRIP1, ZNF143, MTA1, GATA1, TLE3, KLF4, SP7, NCOA3, NR2F2, NR2F1, TCF7L2, KDM5B, TP53, ZNF687, PKNOX1, BCL6B, ELF3, ARRB1, AR, TAF1, YAP1, EGLN2, HSF1, ZBTB26, NCOR1, JUND, BRD4, SCRT1, CUX1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): FAM3B,MX2,BACE2,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops