- Basic information
- CohesinDB ID: CDBP00420060
- Locus: chr21-41557945-41558223
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Data sourse: ENCSR054FKH, GSE72082
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Cell type: Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 45%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SKI, FOSL1, CHD8, BCL6, HMG20A, CEBPA, FOXA2, TOP2A, SOX13, ZFX, XBP1, DUX4, FOXA1, GATAD1, RXRB, HNF4G, KDM1A, RELA, RARA, OGG1, CHD7, RAD21, ARNT, SMAD4, XRCC5, FOS, NR2F6, ZFP69B, ESRRA, NR2F2, CREB1, SMAD1, EZH2, CTCF, ELF3, KAT8, EP300, BHLHE40, HNF4A, SOX5, HDAC2, IKZF5, ZNF644, BRD4, FOXP1, FOXA3, GATAD2A, AHR
- Target gene symbol (double-evidenced CRMs): FAM3B,MX1,BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops