- Basic information
- CohesinDB ID: CDBP00420067
- Locus: chr21-41574001-41574795
-
Data sourse: ENCSR230ZWH, ENCSR917QNE
-
Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 57%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXA2, POU5F1, CEBPA, FOXA1, ZBTB33, HOXB13, HNF4G, YY1, ATF3, ONECUT1, MYC, HOMEZ, RAD21, GRHL3, RXRA, MAX, CDX2, CEBPB, CREB1, ZNF3, SP1, HNF4A, AR, REST, RXR, JUND, SMC3
- Target gene symbol (double-evidenced CRMs): MX1,BACE2,FAM3B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000157601,
- Related loop:
chr21:41125000-41150000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41300000-41325000~~chr21:41575000-41600000,
chr21:41350000-41375000~~chr21:41575000-41600000,
chr21:41425000-41450000~~chr21:41550000-41575000,
chr21:41425000-41450000~~chr21:41575000-41600000,
chr21:41450000-41475000~~chr21:41575000-41600000,
chr21:41575000-41600000~~chr21:42275000-42300000,
chr21:41575000-41600000~~chr21:42800000-42825000,