- Basic information
- CohesinDB ID: CDBP00420071
- Locus: chr21-41590736-41590940
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Data sourse: GSE206145-NatGen2015, GSE111913
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Cell type: RT-112, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TMPRSS2,MX2,FAM3B,MX1,BACE2,ABCG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000160179,
- Related loop:
chr21:41125000-41150000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41300000-41325000~~chr21:41575000-41600000,
chr21:41350000-41375000~~chr21:41575000-41600000,
chr21:41425000-41450000~~chr21:41575000-41600000,
chr21:41450000-41475000~~chr21:41575000-41600000,
chr21:41575000-41600000~~chr21:42275000-42300000,
chr21:41575000-41600000~~chr21:42800000-42825000,