- Basic information
- CohesinDB ID: CDBP00420075
- Locus: chr21-41597407-41599450
-
Data sourse: GSE206145-GSE177045, GSE67783, GSE86191, GSE206145-NatGen2015, GSE68388, ENCSR703TNG, ENCSR917QNE
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Cell type: MCF-7, Fibroblast, HCT-116, Liver, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 41%,
"14_ReprPCWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, XBP1, FOXA1, ZFHX2, ATF3, KLF5, TRIM28, KLF6, ESR1, OCA2, CTCF, MNT, IRF4, ZNF175, GATAD2A, POU2F2, ZSCAN5D, MYCN, ZNF263, ZBTB48, DUX4, ERG2, ERG, PBX1, MYC, SMARCA4, RXRA, NKX2-1, GABPA, STAT3, DNMT3B, NR3C1, ESRRA, CEBPB, KMT2A, CREB1, EZH2, SPI1, EHF, GATA2, FLI1, RUNX1, CBX1, SMC1A, CEBPA, BCL6, CRY1, ZFX, SMAD3, TET2, ERG3, CREBBP, RUNX2, GATA4, ARNT, NRF1, SMARCB1, CDK8, TERF1, MYB, KLF9, SP1, BCL11A, HNF4A, REST, HNRNPLL, TCF3, FOXP1, SMC3, STAG1, SKI, TRP47, PPARG, TBL1X, FOXA2, WT1, ZBTB33, RELA, SP140, HIF1A, MAX, SPIB, ZNF143, PLAG1, CEBPG, NCOA3, NR2F1, MED, EGR2, ELF3, AR, HSF1, NOTCH3, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): ABCG1,TMPRSS2,BACE2,MX1,FAM3B,MX2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000160179,
- Related loop:
chr21:41125000-41150000~~chr21:41575000-41600000,
chr21:41125000-41150000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41300000-41325000~~chr21:41575000-41600000,
chr21:41300000-41325000~~chr21:41600000-41625000,
chr21:41350000-41375000~~chr21:41575000-41600000,
chr21:41367534-41370215~~chr21:41600536-41602815,
chr21:41400000-41425000~~chr21:41600000-41625000,
chr21:41425000-41450000~~chr21:41575000-41600000,
chr21:41425000-41450000~~chr21:41600000-41625000,
chr21:41450000-41475000~~chr21:41575000-41600000,
chr21:41450000-41475000~~chr21:41600000-41625000,
chr21:41500000-41525000~~chr21:41600000-41625000,
chr21:41575000-41600000~~chr21:42275000-42300000,
chr21:41575000-41600000~~chr21:42800000-42825000,
chr21:41600000-41625000~~chr21:41725000-41750000,
chr21:41600000-41625000~~chr21:41750000-41775000,
chr21:41600000-41625000~~chr21:41775000-41800000,
chr21:41600000-41625000~~chr21:41800000-41825000,
chr21:41600000-41625000~~chr21:41825000-41850000,
chr21:41600000-41625000~~chr21:41850000-41875000,
chr21:41600000-41625000~~chr21:41925000-41950000,
chr21:41600000-41625000~~chr21:41950000-41975000,
chr21:41600000-41625000~~chr21:41975000-42000000,
chr21:41600000-41625000~~chr21:42050000-42075000,
chr21:41600000-41625000~~chr21:42075000-42100000,
chr21:41600000-41625000~~chr21:42100000-42125000,
chr21:41600000-41625000~~chr21:42275000-42300000,
chr21:41600000-41625000~~chr21:42375000-42400000,
chr21:41600000-41625000~~chr21:42425000-42450000,
chr21:41600000-41625000~~chr21:42450000-42475000,