- Basic information
- CohesinDB ID: CDBP00420086
- Locus: chr21-41638110-41638628
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE111913, GSE68388
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Cell type: RPE, Fibroblast, RT-112, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 36%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, MED1, CEBPB, SMC1A, MYCN, TRIM28, ZNF331, TEAD4, ZFX, ARNT, TP53, BRD4, TP63, ESR1, ZSCAN5A, MAX, CTCF, TRIM22, PRDM14, ZNF316
- Target gene symbol (double-evidenced CRMs): WDR4,HSF2BP,UMODL1,RIPK4,PRDM15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000183421,
ENSG00000141956,
ENSG00000177398,
ENSG00000160193,
ENSG00000160207,
- Related loop:
chr21:39175000-39200000~~chr21:41625000-41650000,
chr21:41625000-41650000~~chr21:41725000-41750000,
chr21:41625000-41650000~~chr21:41750000-41775000,
chr21:41625000-41650000~~chr21:41775000-41800000,
chr21:41625000-41650000~~chr21:42100000-42125000,
chr21:41625000-41650000~~chr21:42125000-42150000,
chr21:41625000-41650000~~chr21:42825000-42850000,
chr21:41625000-41650000~~chr21:43575000-43600000,
chr21:41633498-41635738~~chr21:41653227-41655048,