- Basic information
- CohesinDB ID: CDBP00420091
- Locus: chr21-41649662-41650037
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE86191
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Cell type: RPE, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 43%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, XBP1, FOXA1, MLL4, HDGF, ATF3, NFIC, ZNF362, RUNX3, PAX5, TP63, TEAD1, ELF1, BCLAF1, ZNF121, SNAI2, ESR1, OCA2, TP73, CTCF, TCF12, JUN, EP300, DPF2, IRF4, E2F4, TEAD4, TFAP2C, EED, POU2F2, POU5F1, ZNF263, RUNX1T1, TOP2A, MTA2, ZSCAN21, ZBTB48, ZSCAN5A, SRF, DDX5, NBN, ETS1, MYC, EOMES, RAD21, GRHL3, STAT3, IKZF1, RCOR1, VDR, NR3C1, CEBPB, CREB1, EZH2, BMPR1A, GRHL2, EBF3, MRTFA, ZHX2, GATAD2B, FLI1, HCFC1, SMARCA5, RELB, MRTFB, RUNX1, SMC1A, ZFX, SMAD3, TET2, CBX8, ZNF384, RUNX2, CDK6, GATA4, PBX4, BACH1, ATF2, PBX3, FOS, MED1, SCRT2, ZNF22, BCL11A, SP1, REST, ZBTB7A, ATF7, AATF, SMC3, STAG1, MEF2B, PPARG, FOXA2, TBL1X, EBF1, CREM, ZNF600, WT1, BCL3, YY1, RELA, TARDBP, JUNB, MCM3, SP140, HIF1A, SKIL, GATA3, BATF, TAL1, MAX, ZNF143, PLAG1, NCOA3, NR2F1, KDM5B, TP53, ZNF687, ZNF334, NFKB1, MYOD1, T, BRD2, BHLHE40, AR, TAF1, EGLN2, HSF1, NOTCH3, BRD4, IKZF2, JUND, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): TMPRSS3,HSF2BP,SLC37A1,TFF1,PKNOX1,TFF2,C2CD2,RSPH1,B3GALT5,PRDM15,WDR4,UMODL1,RIPK4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000183778,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
ENSG00000160181,
ENSG00000160182,
ENSG00000160183,
ENSG00000160188,
ENSG00000160190,
ENSG00000160193,
ENSG00000160199,
ENSG00000160207,
- Related loop:
chr21:39175000-39200000~~chr21:41625000-41650000,
chr21:39625000-39650000~~chr21:41650000-41675000,
chr21:40925000-40950000~~chr21:41650000-41675000,
chr21:41625000-41650000~~chr21:41725000-41750000,
chr21:41625000-41650000~~chr21:41750000-41775000,
chr21:41625000-41650000~~chr21:41775000-41800000,
chr21:41625000-41650000~~chr21:42100000-42125000,
chr21:41625000-41650000~~chr21:42125000-42150000,
chr21:41625000-41650000~~chr21:42825000-42850000,
chr21:41625000-41650000~~chr21:43575000-43600000,
chr21:41633498-41635738~~chr21:41653227-41655048,
chr21:41650000-41675000~~chr21:41750000-41775000,
chr21:41650000-41675000~~chr21:41900000-41925000,
chr21:41650000-41675000~~chr21:41950000-41975000,
chr21:41650000-41675000~~chr21:42100000-42125000,
chr21:41650000-41675000~~chr21:42350000-42375000,
chr21:41650000-41675000~~chr21:42475000-42500000,
chr21:41650000-41675000~~chr21:43000000-43025000,
chr21:41650000-41675000~~chr21:43300000-43325000,
chr21:41650000-41675000~~chr21:43350000-43375000,