- Basic information
- CohesinDB ID: CDBP00420130
- Locus: chr21-41754380-41755068
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE116868, GSE105028, GSE206145, ENCSR000ECE, GSE116344
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Cell type: RPE, H1-hESC, HCT-116, RH4, MB157, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 22%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, SOX2, FOXA1, SUZ12, ATF3, CHD7, MORC2, CBFB, TP63, ZNF736, JMJD1C, ELF1, TRIM28, SNAI2, SAP30, LMO2, ESR1, CTCF, JUN, MNT, LMO1, DPF2, E2F6, TFAP2C, JARID2, GLIS1, NANOG, CHD8, BRD1, POU5F1, MYCN, CDK7, ZNF263, ZBTB48, ZSCAN5A, STAT1, SRF, DDX5, ERG2, SP4, ERG, OGG1, ZNF341, MYC, SMARCA4, RAD21, GRHL3, RXRA, GABPA, STAT3, XRCC5, PRDM14, DNMT3B, NR3C1, CEBPB, CREB1, ZHX2, MXD3, FLI1, MXI1, HCFC1R1, MYF5, RUNX1, SMC1A, CEBPA, SIRT6, SIN3A, ZFX, SMAD3, TET2, ERG3, NOTCH1, RUNX2, FOS, CHD1, MED1, MYB, RBM22, TFAP2A, CTBP2, BCOR, AATF, STAG1, TRP47, CBFA2T2, AGO1, ZNF600, WT1, YY1, RELA, MCM3, SP140, ZIC2, GATA3, BATF, TAL1, MAX, AGO2, CBX2, PLAG1, NEUROG2, NR2F1, KDM5B, TCF7L2, TP53, ZBTB6, ZNF334, MYOD1, EGR2, ELF3, T, BRD2, AR, RXR, HEXIM1, ZBTB26, HSF1, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): MX1,MX2,UBASH3A,FAM3B,PDXK,PRDM15,TMPRSS2,UMODL1,BACE2,RIPK4,PDE9A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000177398,
ENSG00000160185,
ENSG00000160191,
ENSG00000160209,
- Related loop:
chr21:40450000-40475000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41200000-41225000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41300000-41325000~~chr21:41750000-41775000,
chr21:41350000-41375000~~chr21:41750000-41775000,
chr21:41425000-41450000~~chr21:41725000-41750000,
chr21:41425000-41450000~~chr21:41750000-41775000,
chr21:41450000-41475000~~chr21:41750000-41775000,
chr21:41500000-41525000~~chr21:41750000-41775000,
chr21:41600000-41625000~~chr21:41725000-41750000,
chr21:41600000-41625000~~chr21:41750000-41775000,
chr21:41625000-41650000~~chr21:41725000-41750000,
chr21:41625000-41650000~~chr21:41750000-41775000,
chr21:41650000-41675000~~chr21:41750000-41775000,
chr21:41725000-41750000~~chr21:41825000-41850000,
chr21:41725000-41750000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:41850000-41875000,
chr21:41750000-41775000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:42100000-42125000,
chr21:41750000-41775000~~chr21:42425000-42450000,
chr21:41750000-41775000~~chr21:42650000-42675000,
chr21:41750000-41775000~~chr21:43750000-43775000,