- Basic information
- CohesinDB ID: CDBP00420133
- Locus: chr21-41772125-41773546
-
Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, GSE138405, GSE110061, GSE105028, GSE206145-NatGen2015, GSE206145, GSE165895
-
Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, Hela-Kyoto, HSPC, HFFc6, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"13_ReprPC": 39%,
"14_ReprPCWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, TRIM25, NME2, FOXA1, HLF, RXRB, MLL4, KDM3A, ZBTB7B, ZBTB44, IKZF3, PAX5, ZNF320, SFPQ, TEAD1, LMO2, ZNF561, ZNF577, ARID5B, SOX5, PAX8, DEK, E2F4, RFX3, KMT2B, GATAD2A, JARID2, NANOG, BRD3, ZNF263, POU5F1, TOP2A, CTBP1, DUX4, STAT1, SAP130, ERG, ZBTB21, ZBTB8A, SMARCA4, RFX1, UBN1, ZNF398, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, EPAS1, BMPR1A, GABPB1, ZHX2, MIXL1, ZNF257, KLF17, GATA2, ZNF644, MXD3, SIX2, FLI1, DRAP1, MXI1, HCFC1, RELB, HCFC1R1, RUNX1, CEBPA, NKX2-2, HDAC1, REPIN1, TET2, SP5, TRIM22, SMARCC1, PRDM10, ZBTB2, CBX4, ELK1, ZBTB10, ATF2, FOXM1, SP2, SMARCB1, PML, PIAS1, NR1H2, MBD1, IKZF5, ARID2, MBD2, ELL2, ETV4, NFATC3, CBFA2T2, MEF2B, CBX3, CREM, CHD2, PAF1, SS18, WT1, MEF2C, JUNB, ZFP36, TCF4, MAF1, PLAG1, KLF4, ZNF784, ZFP69B, ZNF281, BCL11B, ZBTB6, BCL6B, EGR2, ELF3, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, HSF1, NCOR1, FOSL1, SMARCA2, ZNF660, HNF1A, XBP1, TSC22D4, ATF3, THRB, ZFP64, CBFB, ZNF273, TP63, MITF, ZNF467, JMJD1C, MYOG, ELF1, RBM39, SNAI2, KLF10, FUS, JUN, CTCF, TAF3, MNT, ZBTB20, LMO1, RYBP, DPF2, IRF4, ZNF423, PDX1, TFAP2C, RBPJ, MLX, ZNF239, ZSCAN21, ZBTB17, ZBTB48, MTA2, NONO, SRF, NBN, CHD4, ONECUT1, KDM4A, HOMEZ, TSHZ1, ZNF2, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, ESRRA, STAT5B, KMT2A, ZBTB11, CCAR2, TBL1XR1, KLF8, GRHL2, EBF3, KDM5A, ZBTB14, SSRP1, ZNF146, SMARCA5, NFIL3, THAP11, CTNNB1, ZBTB24, EZH2phosphoT487, AFF4, SOX13, ZNF770, ZNF18, SP3, DAXX, ARNT, BACH1, ZNF48, ZEB2, PBX3, NCAPH2, MAFB, HMGXB4, TEAD3, ZXDB, U2AF1, KLF9, ZBTB18, TBX5, USF1, SP1, BCL11A, TFAP2A, ZNF479, ATF7, ASH2L, CTBP2, PCGF2, GLIS2, PRDM6, ZNF623, SMC3, STAG1, STAG2, MLLT1, ZNF394, TRP47, AGO1, EBF1, ESR2, ZNF580, ZKSCAN1, KDM1A, BRG1, ZIC2, PCGF1, GATA3, KLF15, TAL1, NRIP1, ZNF143, AGO2, MTA1, CBX2, ZNF141, TP53, ZNF334, NFKB1, ZSCAN22, ZNF140, BRD2, PHF5A, KAT8, TBX21, EGR1, RB1, TFIIIC, RNF2, IKZF2, BRD4, JUND, CUX1, ZSCAN23, SMAD4.1D12, PGR, SOX2, PATZ1, RING1B, TFAP4, SIN3B, BMI1, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, SAP30, ESR1, TP73, ZNF524, KLF1, SOX9, SOX4, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZNF778, KDM4C, ZSCAN5A, ERG2, SP4, HIC1, TBP, HNF4G, HOXC5, OGG1, ETS1, MYC, ZNF24, KLF12, NKX2-1, GABPA, MCRS1, STAT3, IKZF1, GFI1, INO80, DNMT3B, EZH2, ZNF652, PHF8, SPI1, ZNF786, HDAC2, ZNF182, GATAD2B, ZNF777, ZNF76, NCOA2, ZNF554, ETV5, BCL6, SIN3A, ERG3, MYBL2, RARA, CREBBP, ZNF384, ZNF35, TAF15, NFYC, ZNF133, SMAD4, ZNF518A, CDK8, ZEB1, SPDEF, SUPT16H, NCOA1, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, NCOR2, ZNF34, CXXC4, PPARG, ZNF692, GTF2B, ZNF30, ZNF574, TCF7, FOXO3, RELA, TARDBP, MAX, ZNF592, TCF7L2, NR2F1, KDM5B, ZNF791, NEUROG2, PKNOX1, MYOD1, T, AR, ZNF445, ZBTB16, ZNF324, HEXIM1, DMAP1, AHR, FOSL2, MBD3, ZNF391, HMG20A, ZSCAN5C, SUZ12, RBFOX2, ZNF28, SFMBT1, ZFHX2, INSM2, NFIC, ZNF362, CTCFL, PRDM1, KLF14, ZNF736, CDX2, ZNF629, KLF5, TRIM28, ETV1, RCOR2, HNF1B, MLL, USF2, TCF12, EP300, BAF155, GATA6, PRDM4, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, CDK7, RUNX1T1, GATAD1, ARID3A, ZNF300, ASCL1, ZNF341, RAD21, GRHL3, PROX1, APC, XRCC5, ZNF614, NFE2, TCF25, ZNF639, ARNTL, ZNF750, FEZF1, TFE3, EHF, HBP1, IRF1, ZNF681, ZGPAT, MRTFB, PTBP1, SMC1A, CBX1, SIRT6, ZNF335, ZFX, ZNF534, FIP1L1, SMAD3, PCBP2, CBX8, PRPF4, NOTCH1, RUNX2, CDK6, GATA4, OSR2, ZNF184, SMAD2, PBX4, NRF1, FOS, CHD1, TGIF2, MED1, CEBPD, MYB, SCRT2, KDM6B, ZNF3, HIF2A, KLF16, NIPBL, ZBTB7A, POU2F3, PHIP, TCF3, SKI, NELFA, KLF13, FOXA2, RBBP5, ZNF600, MIER2, ZBTB33, CDK9, HOXB13, YY1, ASXL1, SP140, HIF1A, BHLHE22, ZNF449, GATA1, TLE3, CEBPG, SP7, NCOA3, NR2F2, ZNF687, ZNF213, ZNF843, NFKBIZ, BHLHE40, TAF1, ZNF579, ZBTB40, ZBTB42, MAZ, BRCA1
- Target gene symbol (double-evidenced CRMs): FAM3B,MX2,PRDM15,PDXK,BACE2,UMODL1,MX1,UBASH3A,TMPRSS2,PDE9A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000183486,
ENSG00000157601,
ENSG00000184012,
ENSG00000141956,
ENSG00000177398,
ENSG00000160185,
ENSG00000160191,
ENSG00000160209,
- Related loop:
chr21:40450000-40475000~~chr21:41750000-41775000,
chr21:41121223-41122885~~chr21:41777107-41779197,
chr21:41121243-41122932~~chr21:41777482-41779192,
chr21:41121256-41122881~~chr21:41777480-41779175,
chr21:41150000-41175000~~chr21:41775000-41800000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41775000-41800000,
chr21:41200000-41225000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41282193-41284644~~chr21:41777403-41779683,
chr21:41282272-41284702~~chr21:41777480-41779175,
chr21:41282282-41284347~~chr21:41777107-41779197,
chr21:41282596-41284333~~chr21:41777823-41779000,
chr21:41300000-41325000~~chr21:41750000-41775000,
chr21:41300000-41325000~~chr21:41775000-41800000,
chr21:41350000-41375000~~chr21:41750000-41775000,
chr21:41368688-41370210~~chr21:41777426-41779194,
chr21:41425000-41450000~~chr21:41750000-41775000,
chr21:41450000-41475000~~chr21:41750000-41775000,
chr21:41500000-41525000~~chr21:41750000-41775000,
chr21:41500000-41525000~~chr21:41775000-41800000,
chr21:41600000-41625000~~chr21:41750000-41775000,
chr21:41600000-41625000~~chr21:41775000-41800000,
chr21:41609749-41611312~~chr21:41776970-41779202,
chr21:41609784-41611333~~chr21:41777107-41779197,
chr21:41609789-41611395~~chr21:41777029-41779230,
chr21:41609799-41611405~~chr21:41777119-41779695,
chr21:41609804-41611416~~chr21:41777001-41779222,
chr21:41609846-41611318~~chr21:41776884-41779232,
chr21:41609888-41611281~~chr21:41776987-41779215,
chr21:41609904-41611393~~chr21:41776938-41779653,
chr21:41609918-41611399~~chr21:41777483-41779218,
chr21:41609918-41611406~~chr21:41777443-41779705,
chr21:41609924-41613852~~chr21:41768024-41769511,
chr21:41609924-41613852~~chr21:41777415-41779665,
chr21:41609962-41611205~~chr21:41777404-41779201,
chr21:41611316-41613965~~chr21:41777050-41779714,
chr21:41611359-41613774~~chr21:41777481-41779205,
chr21:41611373-41613994~~chr21:41776953-41779607,
chr21:41611386-41613766~~chr21:41777404-41779201,
chr21:41611455-41613750~~chr21:41777373-41779198,
chr21:41611455-41613992~~chr21:41776992-41779641,
chr21:41611457-41614038~~chr21:41776932-41779710,
chr21:41611484-41613992~~chr21:41776994-41779212,
chr21:41611486-41613958~~chr21:41777395-41780196,
chr21:41611491-41613751~~chr21:41777017-41779699,
chr21:41611527-41614046~~chr21:41767485-41769529,
chr21:41611527-41614046~~chr21:41776938-41779653,
chr21:41611554-41613773~~chr21:41777443-41779705,
chr21:41611555-41613766~~chr21:41776996-41779208,
chr21:41611555-41613782~~chr21:41767989-41769457,
chr21:41611555-41613782~~chr21:41777265-41779202,
chr21:41611561-41614052~~chr21:41777426-41779194,
chr21:41611562-41613730~~chr21:41767467-41769591,
chr21:41611562-41613730~~chr21:41777119-41779695,
chr21:41611575-41614001~~chr21:41777013-41779207,
chr21:41611599-41613731~~chr21:41777757-41779607,
chr21:41611600-41614022~~chr21:41767431-41769612,
chr21:41611600-41614022~~chr21:41776884-41779232,
chr21:41611601-41613745~~chr21:41776970-41779202,
chr21:41611602-41613913~~chr21:41777403-41779683,
chr21:41611606-41613722~~chr21:41777475-41779137,
chr21:41611608-41614023~~chr21:41776999-41779190,
chr21:41611609-41613772~~chr21:41767416-41769546,
chr21:41611609-41613772~~chr21:41776987-41779215,
chr21:41611609-41614021~~chr21:41777401-41780002,
chr21:41611611-41613781~~chr21:41777488-41779557,
chr21:41611633-41613763~~chr21:41768012-41769738,
chr21:41611633-41613763~~chr21:41777029-41779230,
chr21:41611641-41613677~~chr21:41777439-41779863,
chr21:41611641-41614038~~chr21:41777399-41779223,
chr21:41611728-41613723~~chr21:41777483-41779218,
chr21:41611778-41613765~~chr21:41777001-41779222,
chr21:41611799-41613721~~chr21:41777107-41779197,
chr21:41613941-41615212~~chr21:41776987-41779215,
chr21:41625000-41650000~~chr21:41750000-41775000,
chr21:41625000-41650000~~chr21:41775000-41800000,
chr21:41650000-41675000~~chr21:41750000-41775000,
chr21:41663192-41664922~~chr21:41777395-41780196,
chr21:41663218-41664946~~chr21:41777401-41780002,
chr21:41677602-41679906~~chr21:41776994-41779212,
chr21:41750000-41775000~~chr21:41850000-41875000,
chr21:41750000-41775000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:42100000-42125000,
chr21:41750000-41775000~~chr21:42425000-42450000,
chr21:41750000-41775000~~chr21:42650000-42675000,
chr21:41750000-41775000~~chr21:43750000-43775000,
chr21:41775000-41800000~~chr21:41925000-41950000,
chr21:41775000-41800000~~chr21:42100000-42125000,