- Basic information
- CohesinDB ID: CDBP00420144
- Locus: chr21-41800258-41800436
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Data sourse: ENCSR000BLD, GSE206145
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Cell type: RPE, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 60%,
"5_TxWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, XBP1, FOXA1, ATF3, PRDM1, MORC2, CBFB, TP63, MITF, ETV1, RBM39, ESR1, OCA2, TP73, CTCF, EP300, BAF155, IRF4, TRIM24, E2F4, E2F1, TEAD4, GTF2F1, TFAP2C, EED, POU2F2, CHD8, MYCN, POU5F1, ZNF263, ID3, ZBTB48, ZSCAN5A, STAT1, ERG, PBX1, OGG1, ETS1, MYC, SMARCA4, RAD21, FOXP2, GRHL3, RXRA, GABPA, APC, STAT3, PRDM14, IKZF1, DNMT3B, HNRNPH1, NR3C1, CEBPB, CREB1, EZH2, ZHX2, SPI1, GATA2, MXD3, FLI1, HCFC1R1, PTBP1, RUNX1, SMC1A, CEBPA, SIRT6, ZFX, TET2, ERG3, ZNF384, TAF15, RUNX2, ARNT, DAXX, PBX3, FOS, CDK8, CHD1, MED1, TEAD3, KDM6B, ZNF879, PIAS1, RBM22, SP1, BCL11A, HNF4A, REST, ASH2L, HNRNPLL, TCF3, FOXP1, AATF, SMC3, STAG1, TRP47, FOXA2, TBL1X, AGO1, PAF1, NFATC1, SS18, WT1, ZBTB33, CDK9, HOXB13, BCL3, YY1, RELA, NEUROD1, SP140, GATA3, TAL1, GATA1, AGO2, ZNF143, PLAG1, CEBPG, NR2F1, TCF7L2, KDM5B, TP53, ZNF334, NFKB1, MYOD1, PAX3-FOXO1, AR, RXR, HEXIM1, TFIIIC, HSF1, ZBTB26, NOTCH3, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): RSPH1,UBASH3A,BACE2,UMODL1,SLC37A1,FAM3B,PRDM15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000141956,
ENSG00000177398,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
- Related loop:
chr21:41150000-41175000~~chr21:41775000-41800000,
chr21:41175000-41200000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41300000-41325000~~chr21:41775000-41800000,
chr21:41300000-41325000~~chr21:41800000-41825000,
chr21:41500000-41525000~~chr21:41775000-41800000,
chr21:41600000-41625000~~chr21:41775000-41800000,
chr21:41600000-41625000~~chr21:41800000-41825000,
chr21:41625000-41650000~~chr21:41775000-41800000,
chr21:41775000-41800000~~chr21:41925000-41950000,
chr21:41775000-41800000~~chr21:42100000-42125000,
chr21:41800000-41825000~~chr21:42100000-42125000,
chr21:41800000-41825000~~chr21:42425000-42450000,
chr21:41800000-41825000~~chr21:42475000-42500000,
chr21:41800000-41825000~~chr21:42500000-42525000,
chr21:41800000-41825000~~chr21:42800000-42825000,
chr21:41802187-41803544~~chr21:42125243-42126817,