- Basic information
- CohesinDB ID: CDBP00420207
- Locus: chr21-41982603-41983049
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Data sourse: ENCSR000BLD, GSE105028, GSE206145-NatGen2015, GSE206145, GSE50893
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Cell type: RPE, H1-hESC, Fibroblast, GM12878, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"5_TxWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CDK9-HEXIM1, CBX5, CBX3, POU5F1, SOX2, YY1, RELA, ZNF510, ZNF184, RAD21, PRDM1, PRDM9, ZEB2, TAL1, PAX5, SUPT5H, TRIM28, ZNF791, ESR1, SETDB1, CTCF, AR, HDAC2, ZNF410, BRD4, ZNF280A, NCOA2
- Target gene symbol (double-evidenced CRMs): ZBTB21,PRDM15,UMODL1,C2CD2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops