- Basic information
- CohesinDB ID: CDBP00420208
- Locus: chr21-41985616-41986038
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Data sourse: ShirahigeLab-GSE177045, ENCSR153HNT
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Cell type: K-562, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
96% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, ZNF816, NANOG, PGR, MAFG, FOXA2, ZNF316, PAF1, ZFX, ZNF600, XBP1, ZSCAN16, MAFF, FOXA1, PBX2, HOXB13, SMARCC1, HNF4G, ERG, RELA, ZNF384, AHR, MYC, RUNX2, ZFP64, BRG1, GR, GATA4, ONECUT1, ARNT, HIF1A, RAD21, RXRA, NKX2-1, HMGB2, GABPA, NKX3-1, SUPT5H, ZNF143, TLE3, NR3C1, CEBPB, JMJD1C, NCOA3, TERF1, CREB1, PIAS1, TCF7L2, EZH2, OCA2, PKNOX1, C11orf30, ZNF22, ELF3, RBM22, MAFK, BAF155, ZBTB20, AR, GATA6, ARID2, GATA2, ARID1A, ASH2L, NOTCH3, BRD4, CTBP2, FOXP1, ZNF766, ZNF528, TFAP2C
- Target gene symbol (double-evidenced CRMs): PRDM15,UMODL1,ZBTB21,C2CD2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops