- Basic information
- CohesinDB ID: CDBP00420217
- Locus: chr21-42017482-42017833
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Data sourse: GSE86191, GSE67783, GSE83726
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Cell type: RH4, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, TRP47, BCL6, FOXA2, POU5F1, MYCN, NKX2-2, NFATC1, ZFX, ZBTB17, ZBTB48, ZSCAN5A, WT1, FOXA1, TET2, CBX8, ERG3, BCL3, YY1, RELA, TAF15, MYC, SMARCA4, RAD21, SP140, GRHL3, SKIL, ARNT, ATF2, APC, PAX5, PBX3, MAX, FOS, CBX2, PLAG1, TERF1, CREB1, ESR1, USF2, STAT5A, JUN, CTCF, USF1, SPI1, GSPT2, AR, EGR1, FOSL2, POU2F3, HSF1, RNF2, BRD4, TCF3, MAZ, HCFC1R1, SMC3, STAG1, AHR, EED
- Target gene symbol (double-evidenced CRMs): UMODL1,PRDM15,C2CD2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops