- Basic information
- CohesinDB ID: CDBP00420222
- Locus: chr21-42031578-42034228
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Data sourse: ENCSR000BLD, GSE67783, GSE72082, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, ENCSR153HNT, GSE68388, GSE50893, GSE165895
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, GM12878, RT-112, GM2255, K-562, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 43%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, XBP1, FOXA1, ZFHX2, HDGF, ATF3, RUNX3, TP63, ZNF736, LMO2, ESR1, CTCF, TCF12, DPF2, IRF4, TFAP2C, EED, POU2F2, BRD1, BRD3, MYCN, ZNF263, ID3, POU5F1, MTA2, DUX4, ZBTB48, DDX5, ERG2, ASCL1, ZNF341, MYC, RAD21, GRHL3, STAT3, PRDM14, IKZF1, DNMT3B, ARNTL, ZNF750, NR3C1, EZH2, SPI1, GATA2, GATAD2B, RELB, NCOA2, RUNX1, BCL6, ZFX, TET2, ERG3, TRIM22, MEF2A, ZBTB2, ZNF384, RUNX2, GATA4, ARNT, FOS, CDK8, MED1, MYB, ZMYM3, SETDB1, HNF4A, RBM25, ZNF548, HNRNPLL, TCF3, SMC3, STAG1, ZNF283, CBFA2T2, MEF2B, TRP47, TBL1X, EBF1, WT1, CDK9, KDM1A, YY1, RELA, TARDBP, BRG1, MCM3, SP140, TCF4, BHLHE22, GATA3, TAL1, ZNF143, GATA1, PLAG1, NR2F1, TP53, MYOD1, EGR2, BRD2, TBX21, BHLHE40, AR, ZBTB42, HSF1, ZBTB26, IKZF2, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): PDE9A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops