- Basic information
- CohesinDB ID: CDBP00420241
- Locus: chr21-42103416-42126825
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
-
Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, Ramos, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, BGO3, TC-71, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, HUES9, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 86% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.089
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"7_Enh": 23%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, TRIM25, SMARCA2, HMG20A, ZNF660, SOX2, NME2, MEIS2, XBP1, HNF1A, PATZ1, FOXA1, SUZ12, RXRB, PBX2, MLL4, UBTF, ZFHX2, HNRNPK, TFAP4, MTA2, ATF3, NFIC, ZFP64, THAP1, ZBTB44, CHD7, IKZF3, RUNX3, CBFB, ZNF189, SMARCE1, MECOM, TP63, PAX5, MITF, ZNF736, BACH2, CDX2, ZNF629, JMJD1C, KLF5, TEAD1, TRIM28, ELF1, KLF6, ZNF26, NFE2L2, ETV1, LMO2, ESR1, HNF1B, TP73, SNAI2, OCA2, JUN, CTCF, TCF12, BAF155, EP300, TAF3, MNT, LMO1, SOX5, GATA6, DPF2, TRIM24, RFX5, IRF4, SOX6, ZNF674, RAD51, PRKDC, E2F1, ZNF528, ZNF280A, TEAD4, KMT2B, GTF2F1, PDX1, TFAP2C, RBPJ, EED, CHD8, BRD1, POU5F1, MYCN, BRD3, ZNF263, ZNF778, CDK7, ZNF317, ZBTB17, ZBTB48, ZSCAN5A, STAT1, ZSCAN21, DUX4, SRF, ZNF134, SAP130, DDX5, ARID3A, TBP, ERG, HOXC5, ZBTB21, ASCL1, ZBTB8A, ETS1, MYC, SMARCC2, SMARCA4, ZNF180, TSHZ1, RAD21, HOMEZ, GRHL3, PROX1, NKX2-1, GABPA, STAT3, ZNF614, UBN1, NKX3-1, XRCC5, GFI1, NFE2, RCOR1, ZNF639, NR2F6, ARNTL, IKZF1, NR3C1, CEBPB, ZNF750, KMT2A, CREB1, EZH2, KLF8, GRHL2, FEZF1, MRTFA, ZHX2, SPI1, MIXL1, EHF, IRF1, KLF17, HDAC2, GATA2, ZNF121, FLI1, ZNF777, RELB, HCFC1R1, MRTFB, ZNF554, ETV5, RUNX1, AHRR, BCL6, SMC1A, CBX1, LDB1, NKX2-2, CEBPA, ZNF335, ZFX, AFF4, SOX13, SIN3A, SMAD3, ZNF770, CBX8, TET2, ERG3, RBM39, TRIM22, SMARCC1, PRDM10, ZNF549, CREBBP, RARA, ZNF35, ZNF384, RUNX2, GATA4, OSR2, ZNF184, NRF1, PBX4, ARNT, DAXX, ZEB2, ZNF518A, PBX3, MAFB, ZNF10, FOS, CDK8, CHD1, SMARCB1, MED1, TEAD3, ZEB1, ZNF558, MYB, PIAS1, ZNF331, KLF9, C11orf30, EVI1, SREBF2, MAFK, BCL11A, NIPBL, SP1, TFAP2A, HNF4A, ARID2, IKZF5, ZBTB7A, ARID1A, REST, ATF7, ZHX1, ASH2L, HNRNPLL, PHIP, TCF3, PRDM6, AATF, SMC3, ELL2, NCOR2, STAG1, MLLT1, ZNF394, NFATC3, TRP47, MEF2B, PPARG, FOXA2, CBX3, CREM, MEIS1, SS18, CHD2, ZNF600, ZNF692, ZSCAN16, WT1, MAFF, ZNF30, FOXF1, ZNF574, CDK9, HOXB13, KDM1A, YY1, RELA, TARDBP, NEUROD1, JUNB, SP140, HIF1A, SKIL, OTX2, GATA3, TAL1, MAX, NRIP1, GATA1, MTA1, CBX2, KLF4, ZFP69B, SP7, NCOA3, GFI1B, BAP1, NR2F2, EBF1, TCF7L2, NR2F1, KDM5B, TP53, PKNOX1, MED, ZNF334, NFKB1, MYOD1, BRD2, ELF3, KAT8, TBX21, BHLHE40, AR, TAF1, RXR, ZNF324, EGLN2, ZNF366, ZBTB42, RB1, ZBTB26, RNF2, NCOR1, BRD4, JUND, HSF1, IKZF2, MAZ, ZSCAN23, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HSF2BP,WDR4,UMODL1,RRP1B,ZBTB21,TMPRSS3,FAM3B,BACE2,C2CD2,MX1,ABCG1,TMPRSS2,RSPH1,PDE9A,RIPK4,UBASH3A,PRDM15,SLC37A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2668
- Number of somatic mutations (non-coding): 474
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000157601,
ENSG00000184012,
ENSG00000183421,
ENSG00000141956,
ENSG00000157617,
ENSG00000173276,
ENSG00000177398,
ENSG00000160179,
ENSG00000160183,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
ENSG00000160193,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:41200000-41225000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41425000-41450000~~chr21:42125000-42150000,
chr21:41450000-41475000~~chr21:42100000-42125000,
chr21:41450000-41475000~~chr21:42125000-42150000,
chr21:41600000-41625000~~chr21:42075000-42100000,
chr21:41600000-41625000~~chr21:42100000-42125000,
chr21:41609719-41611366~~chr21:42116767-42118662,
chr21:41609916-41611372~~chr21:42116725-42118988,
chr21:41609923-41611241~~chr21:42116677-42118788,
chr21:41609924-41613852~~chr21:42116702-42118902,
chr21:41609925-41611198~~chr21:42116850-42119542,
chr21:41611373-41613994~~chr21:42116727-42118385,
chr21:41611386-41613766~~chr21:42116765-42118310,
chr21:41611455-41613992~~chr21:42116767-42118662,
chr21:41611517-41613753~~chr21:42116454-42119047,
chr21:41611599-41613731~~chr21:42116715-42119049,
chr21:41611600-41614037~~chr21:42116677-42118788,
chr21:41611649-41613707~~chr21:42116480-42118891,
chr21:41611778-41613765~~chr21:42116645-42118612,
chr21:41611799-41613721~~chr21:42116635-42118386,
chr21:41611839-41613562~~chr21:42116894-42118396,
chr21:41625000-41650000~~chr21:42100000-42125000,
chr21:41625000-41650000~~chr21:42125000-42150000,
chr21:41650000-41675000~~chr21:42100000-42125000,
chr21:41725000-41750000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:42100000-42125000,
chr21:41775000-41800000~~chr21:42100000-42125000,
chr21:41800000-41825000~~chr21:42100000-42125000,
chr21:41802187-41803544~~chr21:42125243-42126817,
chr21:41815096-41818336~~chr21:42116276-42118975,
chr21:41815195-41818114~~chr21:42116443-42118958,
chr21:41815385-41818123~~chr21:42106891-42109246,
chr21:41815385-41818123~~chr21:42116645-42118612,
chr21:41815447-41818293~~chr21:42106952-42108805,
chr21:41815737-41818316~~chr21:42107070-42109056,
chr21:41815737-41818316~~chr21:42116480-42118891,
chr21:41815737-41818351~~chr21:42116256-42118602,
chr21:41815747-41818270~~chr21:42116587-42119641,
chr21:41815762-41818291~~chr21:42106954-42108828,
chr21:41815762-41818291~~chr21:42116742-42118600,
chr21:41815785-41818093~~chr21:42106648-42108930,
chr21:41815785-41818093~~chr21:42116635-42118386,
chr21:41815790-41818726~~chr21:42116679-42118765,
chr21:41815797-41818318~~chr21:42116717-42118997,
chr21:41815801-41818255~~chr21:42116652-42118623,
chr21:41815802-41818289~~chr21:42116718-42118814,
chr21:41815809-41818325~~chr21:42116692-42118897,
chr21:41815809-41818765~~chr21:42116737-42118378,
chr21:41815822-41818125~~chr21:42116708-42118554,
chr21:41815837-41818350~~chr21:42116767-42118662,
chr21:41815837-41818350~~chr21:42125269-42126883,
chr21:41815839-41818255~~chr21:42116749-42118385,
chr21:41815923-41818297~~chr21:42106594-42109053,
chr21:41815923-41818297~~chr21:42116811-42119739,
chr21:41816016-41818176~~chr21:42116818-42119705,
chr21:41816044-41818153~~chr21:42116850-42119542,
chr21:41816062-41818083~~chr21:42107290-42108688,
chr21:41816081-41818131~~chr21:42116778-42118373,
chr21:41825000-41850000~~chr21:42100000-42125000,
chr21:41846872-41848292~~chr21:42116256-42118602,
chr21:41850000-41875000~~chr21:42075000-42100000,
chr21:41850000-41875000~~chr21:42100000-42125000,
chr21:41872516-41873998~~chr21:42116737-42118378,
chr21:41875000-41900000~~chr21:42100000-42125000,
chr21:41876408-41880502~~chr21:42116480-42118891,
chr21:41900000-41925000~~chr21:42100000-42125000,
chr21:41925000-41950000~~chr21:42075000-42100000,
chr21:41925000-41950000~~chr21:42100000-42125000,
chr21:41931617-41935016~~chr21:42116717-42118997,
chr21:41931627-41934942~~chr21:42106891-42109246,
chr21:41931627-41934942~~chr21:42116645-42118612,
chr21:41931641-41934899~~chr21:42116704-42118362,
chr21:41931667-41934991~~chr21:42106648-42108930,
chr21:41931667-41934991~~chr21:42116635-42118386,
chr21:41931668-41934949~~chr21:42116674-42118422,
chr21:41931678-41934978~~chr21:42116708-42118415,
chr21:41931733-41935274~~chr21:42116276-42118975,
chr21:41931738-41935261~~chr21:42116256-42118602,
chr21:41933026-41935331~~chr21:42116759-42118352,
chr21:41933042-41935253~~chr21:42116707-42118594,
chr21:41933531-41934760~~chr21:42116715-42119049,
chr21:41950000-41975000~~chr21:42100000-42125000,
chr21:41973118-41974876~~chr21:42116725-42118346,
chr21:41975000-42000000~~chr21:42075000-42100000,
chr21:42000000-42025000~~chr21:42100000-42125000,
chr21:42008409-42012026~~chr21:42106683-42108941,
chr21:42008452-42012075~~chr21:42106648-42108930,
chr21:42008727-42012041~~chr21:42106936-42108928,
chr21:42008728-42012071~~chr21:42106883-42109087,
chr21:42008730-42010862~~chr21:42116718-42118814,
chr21:42008738-42010602~~chr21:42116725-42118988,
chr21:42008738-42011645~~chr21:42106897-42108988,
chr21:42008738-42011645~~chr21:42116715-42119049,
chr21:42008738-42012043~~chr21:42106900-42108919,
chr21:42008744-42011714~~chr21:42106670-42109262,
chr21:42008744-42011714~~chr21:42116454-42119047,
chr21:42060877-42064978~~chr21:42106670-42109262,
chr21:42075108-42076806~~chr21:42106936-42108928,
chr21:42116713-42118377~~chr21:42449324-42450723,
chr21:42125000-42150000~~chr21:42225000-42250000,
chr21:42125000-42150000~~chr21:42250000-42275000,
chr21:42125000-42150000~~chr21:42275000-42300000,
chr21:42125000-42150000~~chr21:42300000-42325000,
chr21:42125000-42150000~~chr21:42375000-42400000,
chr21:42125000-42150000~~chr21:42425000-42450000,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42525000-42550000,
chr21:42125000-42150000~~chr21:42550000-42575000,
chr21:42125000-42150000~~chr21:42575000-42600000,
chr21:42125000-42150000~~chr21:42650000-42675000,
chr21:42125000-42150000~~chr21:42675000-42700000,
chr21:42125000-42150000~~chr21:42775000-42800000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42125000-42150000~~chr21:43650000-43675000,