- Basic information
- CohesinDB ID: CDBP00420249
- Locus: chr21-42139645-42142559
-
Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
-
Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 43%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, CBFA2T2, BCL6, MEF2B, FOXA2, MYCN, ZFX, XBP1, MTA2, ZBTB48, WT1, STAT1, CDK9, YY1, RELA, PBX1, NOTCH1, ATF3, MYC, SMARCA4, RUNX3, SP140, ARNT, TCF4, BHLHE22, GABPA, DPF1, TAL1, MAX, SUPT5H, ZNF143, MITF, IKZF1, MED1, PLAG1, VDR, BCL11B, NR2F2, KMT2A, MYB, ESR1, OCA2, MLL, L3MBTL2, USF2, MYOD1, GABPB1, CTCF, TCF12, USF1, BCL11A, SPI1, MNT, BHLHE40, DPF2, REST, FLI1, RAD51, IKZF2, BRD4, NOTCH3, TCF3, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): RRP1B,FAM3B,TMPRSS3,HSF2BP,UMODL1,BACE2,PDE9A,SLC37A1,RSPH1,MX1,TMPRSS2,ABCG1,UBASH3A,WDR4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 136
- Number of somatic mutations (non-coding): 34
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000157601,
ENSG00000184012,
ENSG00000177398,
ENSG00000160179,
ENSG00000160183,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
ENSG00000160193,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41425000-41450000~~chr21:42125000-42150000,
chr21:41450000-41475000~~chr21:42125000-42150000,
chr21:41625000-41650000~~chr21:42125000-42150000,
chr21:42125000-42150000~~chr21:42225000-42250000,
chr21:42125000-42150000~~chr21:42250000-42275000,
chr21:42125000-42150000~~chr21:42275000-42300000,
chr21:42125000-42150000~~chr21:42300000-42325000,
chr21:42125000-42150000~~chr21:42375000-42400000,
chr21:42125000-42150000~~chr21:42425000-42450000,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42525000-42550000,
chr21:42125000-42150000~~chr21:42550000-42575000,
chr21:42125000-42150000~~chr21:42575000-42600000,
chr21:42125000-42150000~~chr21:42650000-42675000,
chr21:42125000-42150000~~chr21:42675000-42700000,
chr21:42125000-42150000~~chr21:42775000-42800000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42125000-42150000~~chr21:43650000-43675000,
chr21:42144166-42146785~~chr21:42257788-42259761,
chr21:42144186-42146844~~chr21:42448861-42450956,
chr21:42144207-42146848~~chr21:42257747-42259915,
chr21:42144207-42146848~~chr21:42380765-42382404,
chr21:42144207-42146848~~chr21:42816981-42819855,
chr21:42144210-42146803~~chr21:42257794-42259803,
chr21:42144211-42146835~~chr21:42257776-42259795,
chr21:42144211-42146835~~chr21:42449010-42450957,
chr21:42144376-42146867~~chr21:42448889-42450963,
chr21:42144396-42146769~~chr21:42257874-42259616,
chr21:42144396-42146769~~chr21:42268874-42270578,
chr21:42144396-42146769~~chr21:42276263-42277458,
chr21:42144411-42146838~~chr21:42257750-42260047,
chr21:42144411-42146838~~chr21:42302311-42304212,
chr21:42144411-42146838~~chr21:42336819-42339025,
chr21:42144411-42146838~~chr21:42379115-42382711,
chr21:42144411-42146838~~chr21:42448763-42451324,
chr21:42144415-42146862~~chr21:42257791-42259828,
chr21:42144415-42146862~~chr21:42448353-42451045,
chr21:42144416-42146844~~chr21:42449061-42450957,
chr21:42144416-42146844~~chr21:42536796-42538220,
chr21:42144446-42146688~~chr21:42448842-42450940,
chr21:42144450-42146775~~chr21:42257861-42259727,
chr21:42144457-42146811~~chr21:42380286-42382659,
chr21:42144457-42146811~~chr21:42448861-42450972,
chr21:42144464-42146853~~chr21:42448862-42450942,
chr21:42144587-42146751~~chr21:42257937-42259543,
chr21:42144599-42146873~~chr21:42380621-42382601,
chr21:42144601-42146847~~chr21:42257791-42259910,
chr21:42144601-42146847~~chr21:42309014-42310756,
chr21:42144666-42146603~~chr21:42257998-42259702,
chr21:42144666-42146603~~chr21:42449091-42451494,
chr21:42144666-42146603~~chr21:42536570-42538455,
chr21:42144672-42146558~~chr21:42449337-42450741,
chr21:42144672-42146558~~chr21:42817722-42819834,
chr21:42144679-42146840~~chr21:42257801-42259871,
chr21:42144679-42146840~~chr21:42448762-42450961,
chr21:42144681-42146751~~chr21:42257798-42260906,
chr21:42144690-42146856~~chr21:42257772-42259645,
chr21:42144691-42147023~~chr21:42257772-42259840,
chr21:42144691-42147023~~chr21:42448752-42450926,
chr21:42144726-42146738~~chr21:42257878-42259619,
chr21:42144735-42146659~~chr21:42448856-42450964,
chr21:42144746-42146589~~chr21:42257982-42259586,
chr21:42144746-42146589~~chr21:42449078-42451430,
chr21:42144747-42146542~~chr21:42258014-42259527,
chr21:42144760-42146774~~chr21:42448885-42450942,
chr21:42144761-42146752~~chr21:42257787-42259818,
chr21:42144767-42146839~~chr21:42257930-42259773,
chr21:42144767-42146839~~chr21:42268678-42270523,
chr21:42144767-42146855~~chr21:42257917-42259640,
chr21:42144768-42146845~~chr21:42257753-42259725,
chr21:42144768-42146845~~chr21:42448789-42450976,
chr21:42144769-42146888~~chr21:42257959-42259654,
chr21:42144769-42146888~~chr21:42448845-42450957,
chr21:42144776-42146791~~chr21:42257930-42259659,
chr21:42144776-42146791~~chr21:42380859-42382357,
chr21:42144776-42146791~~chr21:42448814-42450934,
chr21:42144776-42146791~~chr21:42817609-42819795,
chr21:42144797-42146760~~chr21:42449311-42450852,
chr21:42144798-42146688~~chr21:42257985-42259687,
chr21:42144798-42146688~~chr21:42537025-42538186,
chr21:42144929-42146574~~chr21:42257974-42259612,
chr21:42144929-42146574~~chr21:42308432-42311039,
chr21:42144929-42146574~~chr21:42449093-42451498,
chr21:42144930-42146490~~chr21:42258020-42259519,
chr21:42144930-42146490~~chr21:42449278-42451482,
chr21:42144995-42146449~~chr21:42380974-42382225,