- Basic information
- CohesinDB ID: CDBP00420250
- Locus: chr21-42143139-42149312
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, TC-71, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, K-562, Leukemia-SEM, HUES9, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 82% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.122
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 35%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, TRP47, CBFA2T2, MAFG, FOXA2, MYCN, ZNF263, ZFX, XBP1, MTA2, ZBTB48, WT1, ERG, YY1, RELA, CREBBP, OGG1, ATF3, MYC, SP140, GRHL3, CBFB, ATF2, PRDM9, STAT3, SUPT5H, CHD1, NFE2, CEBPB, STAT5B, TRIM28, SCRT2, NR2F1, ESR1, OCA2, TP53, ZNF334, STAT5A, CTCF, BCL11A, TBX21, AR, RXR, GATAD2B, HEXIM1, ATF7, FLI1, HSF1, HNRNPLL, BRD4, JUND, SCRT1, MAZ, AATF, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): FAM3B,TMPRSS3,ABCG1,UMODL1,SLC37A1,HSF2BP,RSPH1,MX1,TMPRSS2,BACE2,RRP1B,WDR4,UBASH3A,PDE9A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 40
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000157601,
ENSG00000184012,
ENSG00000177398,
ENSG00000160179,
ENSG00000160183,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
ENSG00000160193,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41425000-41450000~~chr21:42125000-42150000,
chr21:41450000-41475000~~chr21:42125000-42150000,
chr21:41625000-41650000~~chr21:42125000-42150000,
chr21:42125000-42150000~~chr21:42225000-42250000,
chr21:42125000-42150000~~chr21:42250000-42275000,
chr21:42125000-42150000~~chr21:42275000-42300000,
chr21:42125000-42150000~~chr21:42300000-42325000,
chr21:42125000-42150000~~chr21:42375000-42400000,
chr21:42125000-42150000~~chr21:42425000-42450000,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42525000-42550000,
chr21:42125000-42150000~~chr21:42550000-42575000,
chr21:42125000-42150000~~chr21:42575000-42600000,
chr21:42125000-42150000~~chr21:42650000-42675000,
chr21:42125000-42150000~~chr21:42675000-42700000,
chr21:42125000-42150000~~chr21:42775000-42800000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42125000-42150000~~chr21:43650000-43675000,
chr21:42144166-42146785~~chr21:42257788-42259761,
chr21:42144186-42146844~~chr21:42448861-42450956,
chr21:42144207-42146848~~chr21:42257747-42259915,
chr21:42144207-42146848~~chr21:42380765-42382404,
chr21:42144207-42146848~~chr21:42816981-42819855,
chr21:42144210-42146803~~chr21:42257794-42259803,
chr21:42144211-42146835~~chr21:42257776-42259795,
chr21:42144211-42146835~~chr21:42449010-42450957,
chr21:42144376-42146867~~chr21:42448889-42450963,
chr21:42144396-42146769~~chr21:42257874-42259616,
chr21:42144396-42146769~~chr21:42268874-42270578,
chr21:42144396-42146769~~chr21:42276263-42277458,
chr21:42144411-42146838~~chr21:42257750-42260047,
chr21:42144411-42146838~~chr21:42302311-42304212,
chr21:42144411-42146838~~chr21:42336819-42339025,
chr21:42144411-42146838~~chr21:42379115-42382711,
chr21:42144411-42146838~~chr21:42448763-42451324,
chr21:42144415-42146862~~chr21:42257791-42259828,
chr21:42144415-42146862~~chr21:42448353-42451045,
chr21:42144416-42146844~~chr21:42449061-42450957,
chr21:42144416-42146844~~chr21:42536796-42538220,
chr21:42144446-42146688~~chr21:42448842-42450940,
chr21:42144450-42146775~~chr21:42257861-42259727,
chr21:42144457-42146811~~chr21:42380286-42382659,
chr21:42144457-42146811~~chr21:42448861-42450972,
chr21:42144464-42146853~~chr21:42448862-42450942,
chr21:42144587-42146751~~chr21:42257937-42259543,
chr21:42144599-42146873~~chr21:42380621-42382601,
chr21:42144601-42146847~~chr21:42257791-42259910,
chr21:42144601-42146847~~chr21:42309014-42310756,
chr21:42144666-42146603~~chr21:42257998-42259702,
chr21:42144666-42146603~~chr21:42449091-42451494,
chr21:42144666-42146603~~chr21:42536570-42538455,
chr21:42144672-42146558~~chr21:42449337-42450741,
chr21:42144672-42146558~~chr21:42817722-42819834,
chr21:42144679-42146840~~chr21:42257801-42259871,
chr21:42144679-42146840~~chr21:42448762-42450961,
chr21:42144681-42146751~~chr21:42257798-42260906,
chr21:42144690-42146856~~chr21:42257772-42259645,
chr21:42144691-42147023~~chr21:42257772-42259840,
chr21:42144691-42147023~~chr21:42448752-42450926,
chr21:42144726-42146738~~chr21:42257878-42259619,
chr21:42144735-42146659~~chr21:42448856-42450964,
chr21:42144746-42146589~~chr21:42257982-42259586,
chr21:42144746-42146589~~chr21:42449078-42451430,
chr21:42144747-42146542~~chr21:42258014-42259527,
chr21:42144760-42146774~~chr21:42448885-42450942,
chr21:42144761-42146752~~chr21:42257787-42259818,
chr21:42144767-42146839~~chr21:42257930-42259773,
chr21:42144767-42146839~~chr21:42268678-42270523,
chr21:42144767-42146855~~chr21:42257917-42259640,
chr21:42144768-42146845~~chr21:42257753-42259725,
chr21:42144768-42146845~~chr21:42448789-42450976,
chr21:42144769-42146888~~chr21:42257959-42259654,
chr21:42144769-42146888~~chr21:42448845-42450957,
chr21:42144776-42146791~~chr21:42257930-42259659,
chr21:42144776-42146791~~chr21:42380859-42382357,
chr21:42144776-42146791~~chr21:42448814-42450934,
chr21:42144776-42146791~~chr21:42817609-42819795,
chr21:42144797-42146760~~chr21:42449311-42450852,
chr21:42144798-42146688~~chr21:42257985-42259687,
chr21:42144798-42146688~~chr21:42537025-42538186,
chr21:42144929-42146574~~chr21:42257974-42259612,
chr21:42144929-42146574~~chr21:42308432-42311039,
chr21:42144929-42146574~~chr21:42449093-42451498,
chr21:42144930-42146490~~chr21:42258020-42259519,
chr21:42144930-42146490~~chr21:42449278-42451482,
chr21:42144995-42146449~~chr21:42380974-42382225,
chr21:42150000-42175000~~chr21:42250000-42275000,
chr21:42150000-42175000~~chr21:42275000-42300000,
chr21:42150000-42175000~~chr21:42300000-42325000,
chr21:42150000-42175000~~chr21:42375000-42400000,
chr21:42150000-42175000~~chr21:42425000-42450000,
chr21:42150000-42175000~~chr21:42450000-42475000,
chr21:42150000-42175000~~chr21:42525000-42550000,
chr21:42150000-42175000~~chr21:42550000-42575000,
chr21:42150000-42175000~~chr21:42575000-42600000,
chr21:42150000-42175000~~chr21:42800000-42825000,
chr21:42150000-42175000~~chr21:42825000-42850000,
chr21:42150000-42175000~~chr21:43200000-43225000,
chr21:42150000-42175000~~chr21:43300000-43325000,
chr21:42150000-42175000~~chr21:43625000-43650000,