- Basic information
- CohesinDB ID: CDBP00420251
- Locus: chr21-42149675-42151617
-
Data sourse: GSE206145-GSE177045, GSE131606, GSE67783, GSE86191, GSE116868, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE25021
-
Cell type: MCF-7, RPE, Fibroblast, HCT-116, MB157, RT-112, K-562, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 41%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, ZNF426, NME2, FOXA1, RXRB, MLL4, KDM3A, ZBTB7B, HDGF, PAX5, TEAD1, ZNF121, OCA2, PITX3, ZNF577, E4F1, SOX5, PAX8, DEK, E2F4, ZNF528, ZNF555, KMT2B, GATAD2A, ZNF263, TOP2A, CTBP1, DUX4, STAT1, ZNF563, ERG, NFKB2, ZBTB8A, EZH1, SMARCA4, RFX1, ZNF8, ZNF398, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, GABPB1, KLF17, GATA2, FLI1, HCFC1, DRAP1, MXI1, NR2C2, RELB, HCFC1R1, RUNX1, CEBPA, NKX2-2, HDAC1, CRY1, ZNF654, TET2, TRIM22, SMARCC1, PRDM10, ZBTB2, TFDP1, ATF2, FOXM1, SMARCB1, PIAS1, SMAD1, NR1H2, EVI1, STAT5A, ARID2, ELL2, NFATC3, CBFA2T2, MEF2B, ZNF207, CHD2, SS18, NFATC1, ZSCAN16, WT1, MEF2C, NEUROD1, ZNF510, ZFP36, TCF4, ZNF311, BATF, MAF1, ZSCAN26, PLAG1, ZFP69B, KLF4, BCL11B, ZNF281, ZBTB6, EGR2, ELF3, RXR, EGLN2, ZNF366, HSF1, ZBTB26, ILF3, ZNF316, FOSL1, XBP1, ZNF101, PBX2, TSC22D4, ATF3, ZFP64, RUNX3, CBFB, TP63, ZSCAN4, MITF, ZNF467, JMJD1C, MAF, ELF1, ZNF573, RBM39, SNAI2, CTCF, JUN, MNT, LMO1, ZBTB20, DPF2, SIX5, IRF4, ZNF423, TFAP2C, RBPJ, YBX1, ZBTB17, ZBTB48, NONO, SRF, DDX5, NBN, ZNF329, PBX1, HOMEZ, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, ESRRA, STAT5B, KMT2A, ZBTB11, ARHGAP35, GRHL2, EBF3, SMARCA5, THAP11, LDB1, AFF4, SOX13, POU4F2, ZNF770, NFIB, ARNT, ZNF48, PRDM9, PBX3, NCAPH2, HMGXB4, TEAD3, DIDO1, ZNF670, ZXDB, ZNF680, KLF9, SP1, BCL11A, TFAP2A, NKX2-5, ATF7, ASH2L, CTBP2, GLIS2, PRDM6, ZNF623, SMC3, MLLT1, STAG1, STAG2, ZNF394, TRP47, MTA3, EBF1, MAFF, ZNF580, ZKSCAN1, BCL3, KDM1A, ZNF266, BRG1, ZIC2, GATA3, TAL1, NRIP1, ZNF143, MTA1, CBX2, TP53, ZNF334, ZSCAN22, NFKB1, ZNF140, BRD2, TBX21, RB1, BRD4, JUND, ZSCAN23, PGR, ZNF697, SOX2, PATZ1, TFAP4, BMI1, ZNF444, MXD4, ZNF189, NFE2L2, ESR1, PRKDC, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZNF778, ZBTB1, ZSCAN5A, ERG2, SP4, TBP, HOXC5, OGG1, ETS1, MYC, NKX2-1, GABPA, STAT3, IKZF1, DNMT3B, SRSF3, YBX3, EZH2, SPI1, HDAC2, GATAD2B, ATM, NFYB, ZNF554, NCOA2, ETV5, BCL6, ERG3, CREBBP, ZNF35, RARA, TAF15, ZNF781, ZNF518A, SMAD4, CBFA2T3, CDK8, ZEB1, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, ZNF34, PPARG, ZNF692, GTF2B, ZNF662, ZNF574, RELA, TARDBP, SKIL, MAX, GFI1B, ZNF791, TCF7L2, KDM5B, NR2F1, PKNOX1, MYOD1, AR, PAX3-FOXO1, HEXIM1, AHR, FOSL2, LCORL, MEIS2, SUZ12, ZNF28, ZFHX2, CTCFL, PRDM12, MECOM, ZNF629, BCLAF1, TRIM28, ETV1, USF2, TCF12, EP300, BAF155, ZNF512B, E2F1, SMC1, TEAD4, EHMT2, EED, CHD8, BRD1, MYCN, RUNX1T1, CDK7, ID3, ZNF205, GATAD1, ARID3A, ZNF300, ASCL1, MCM5, RAD21, GRHL3, XRCC5, ZNF614, NFE2, ZNF667, ZNF750, JMJD6, HES1, ZNF664, TFE3, IRF1, MRTFB, ZC3H11A, MYF5, SMC1A, CBX1, ZFX, ZNF534, SMAD3, TWIST1, NOTCH1, CDK6, OSR2, PBX4, NR2C1, SUPT5H, FOS, CHD1, MED1, ZNF558, MYB, SETDB1, KLF16, NIPBL, ZBTB7A, PHIP, TCF3, SKI, FOXA2, ZNF600, FOXF1, ZBTB33, CDK9, HOXB13, YY1, SP140, HIF1A, OTX2, GATA1, HAND2, TLE3, SP7, NCOA3, NR2F2, ZNF687, ZNF213, BHLHE40, NFKBIZ, ZBTB42, NOTCH3, CLOCK, MAZ, BRCA1
- Target gene symbol (double-evidenced CRMs): ABCG1,TMPRSS2,HSF2BP,MX1,BACE2,FAM3B,RRP1B,SLC37A1,WDR4,UBASH3A,RSPH1,PDE9A,TMPRSS3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000157601,
ENSG00000184012,
ENSG00000160179,
ENSG00000160183,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
ENSG00000160193,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41425000-41450000~~chr21:42125000-42150000,
chr21:41450000-41475000~~chr21:42125000-42150000,
chr21:41625000-41650000~~chr21:42125000-42150000,
chr21:42125000-42150000~~chr21:42225000-42250000,
chr21:42125000-42150000~~chr21:42250000-42275000,
chr21:42125000-42150000~~chr21:42275000-42300000,
chr21:42125000-42150000~~chr21:42300000-42325000,
chr21:42125000-42150000~~chr21:42375000-42400000,
chr21:42125000-42150000~~chr21:42425000-42450000,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42525000-42550000,
chr21:42125000-42150000~~chr21:42550000-42575000,
chr21:42125000-42150000~~chr21:42575000-42600000,
chr21:42125000-42150000~~chr21:42650000-42675000,
chr21:42125000-42150000~~chr21:42675000-42700000,
chr21:42125000-42150000~~chr21:42775000-42800000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42125000-42150000~~chr21:43650000-43675000,
chr21:42144166-42146785~~chr21:42257788-42259761,
chr21:42144186-42146844~~chr21:42448861-42450956,
chr21:42144207-42146848~~chr21:42257747-42259915,
chr21:42144207-42146848~~chr21:42380765-42382404,
chr21:42144207-42146848~~chr21:42816981-42819855,
chr21:42144210-42146803~~chr21:42257794-42259803,
chr21:42144211-42146835~~chr21:42257776-42259795,
chr21:42144211-42146835~~chr21:42449010-42450957,
chr21:42144376-42146867~~chr21:42448889-42450963,
chr21:42144396-42146769~~chr21:42257874-42259616,
chr21:42144396-42146769~~chr21:42268874-42270578,
chr21:42144396-42146769~~chr21:42276263-42277458,
chr21:42144411-42146838~~chr21:42257750-42260047,
chr21:42144411-42146838~~chr21:42302311-42304212,
chr21:42144411-42146838~~chr21:42336819-42339025,
chr21:42144411-42146838~~chr21:42379115-42382711,
chr21:42144411-42146838~~chr21:42448763-42451324,
chr21:42144415-42146862~~chr21:42257791-42259828,
chr21:42144415-42146862~~chr21:42448353-42451045,
chr21:42144416-42146844~~chr21:42449061-42450957,
chr21:42144416-42146844~~chr21:42536796-42538220,
chr21:42144446-42146688~~chr21:42448842-42450940,
chr21:42144450-42146775~~chr21:42257861-42259727,
chr21:42144457-42146811~~chr21:42380286-42382659,
chr21:42144457-42146811~~chr21:42448861-42450972,
chr21:42144464-42146853~~chr21:42448862-42450942,
chr21:42144587-42146751~~chr21:42257937-42259543,
chr21:42144599-42146873~~chr21:42380621-42382601,
chr21:42144601-42146847~~chr21:42257791-42259910,
chr21:42144601-42146847~~chr21:42309014-42310756,
chr21:42144666-42146603~~chr21:42257998-42259702,
chr21:42144666-42146603~~chr21:42449091-42451494,
chr21:42144666-42146603~~chr21:42536570-42538455,
chr21:42144672-42146558~~chr21:42449337-42450741,
chr21:42144672-42146558~~chr21:42817722-42819834,
chr21:42144679-42146840~~chr21:42257801-42259871,
chr21:42144679-42146840~~chr21:42448762-42450961,
chr21:42144681-42146751~~chr21:42257798-42260906,
chr21:42144690-42146856~~chr21:42257772-42259645,
chr21:42144691-42147023~~chr21:42257772-42259840,
chr21:42144691-42147023~~chr21:42448752-42450926,
chr21:42144726-42146738~~chr21:42257878-42259619,
chr21:42144735-42146659~~chr21:42448856-42450964,
chr21:42144746-42146589~~chr21:42257982-42259586,
chr21:42144746-42146589~~chr21:42449078-42451430,
chr21:42144747-42146542~~chr21:42258014-42259527,
chr21:42144760-42146774~~chr21:42448885-42450942,
chr21:42144761-42146752~~chr21:42257787-42259818,
chr21:42144767-42146839~~chr21:42257930-42259773,
chr21:42144767-42146839~~chr21:42268678-42270523,
chr21:42144767-42146855~~chr21:42257917-42259640,
chr21:42144768-42146845~~chr21:42257753-42259725,
chr21:42144768-42146845~~chr21:42448789-42450976,
chr21:42144769-42146888~~chr21:42257959-42259654,
chr21:42144769-42146888~~chr21:42448845-42450957,
chr21:42144776-42146791~~chr21:42257930-42259659,
chr21:42144776-42146791~~chr21:42380859-42382357,
chr21:42144776-42146791~~chr21:42448814-42450934,
chr21:42144776-42146791~~chr21:42817609-42819795,
chr21:42144797-42146760~~chr21:42449311-42450852,
chr21:42144798-42146688~~chr21:42257985-42259687,
chr21:42144798-42146688~~chr21:42537025-42538186,
chr21:42144929-42146574~~chr21:42257974-42259612,
chr21:42144929-42146574~~chr21:42308432-42311039,
chr21:42144929-42146574~~chr21:42449093-42451498,
chr21:42144930-42146490~~chr21:42258020-42259519,
chr21:42144930-42146490~~chr21:42449278-42451482,
chr21:42144995-42146449~~chr21:42380974-42382225,
chr21:42150000-42175000~~chr21:42250000-42275000,
chr21:42150000-42175000~~chr21:42275000-42300000,
chr21:42150000-42175000~~chr21:42300000-42325000,
chr21:42150000-42175000~~chr21:42375000-42400000,
chr21:42150000-42175000~~chr21:42425000-42450000,
chr21:42150000-42175000~~chr21:42450000-42475000,
chr21:42150000-42175000~~chr21:42525000-42550000,
chr21:42150000-42175000~~chr21:42550000-42575000,
chr21:42150000-42175000~~chr21:42575000-42600000,
chr21:42150000-42175000~~chr21:42800000-42825000,
chr21:42150000-42175000~~chr21:42825000-42850000,
chr21:42150000-42175000~~chr21:43200000-43225000,
chr21:42150000-42175000~~chr21:43300000-43325000,
chr21:42150000-42175000~~chr21:43625000-43650000,