- Basic information
- CohesinDB ID: CDBP00420256
- Locus: chr21-42168175-42168574
-
Data sourse: GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, CREBBP, NR3C1, PGR, ZBTB40, FOXA2, GATA4, ZSCAN16, ESR1, NCOA1, GATA3, FOXA1, NCOA2, NRIP1, BAF155, TFAP2C
- Target gene symbol (double-evidenced CRMs): RSPH1,HSF2BP,ABCG1,TMPRSS3,SLC37A1,UBASH3A,WDR4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000160179,
ENSG00000160183,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
ENSG00000160193,
ENSG00000160207,
- Related loop:
chr21:42150000-42175000~~chr21:42250000-42275000,
chr21:42150000-42175000~~chr21:42275000-42300000,
chr21:42150000-42175000~~chr21:42300000-42325000,
chr21:42150000-42175000~~chr21:42375000-42400000,
chr21:42150000-42175000~~chr21:42425000-42450000,
chr21:42150000-42175000~~chr21:42450000-42475000,
chr21:42150000-42175000~~chr21:42525000-42550000,
chr21:42150000-42175000~~chr21:42550000-42575000,
chr21:42150000-42175000~~chr21:42575000-42600000,
chr21:42150000-42175000~~chr21:42800000-42825000,
chr21:42150000-42175000~~chr21:42825000-42850000,
chr21:42150000-42175000~~chr21:43200000-43225000,
chr21:42150000-42175000~~chr21:43300000-43325000,
chr21:42150000-42175000~~chr21:43625000-43650000,
chr21:42162848-42165688~~chr21:42257772-42259840,
chr21:42162848-42165688~~chr21:42448752-42450926,
chr21:42163341-42165646~~chr21:42232057-42235346,
chr21:42163341-42165646~~chr21:42257750-42260047,
chr21:42163341-42165646~~chr21:42448763-42451324,
chr21:42163482-42166809~~chr21:42257798-42260906,
chr21:42163482-42166809~~chr21:42448782-42450960,
chr21:42163513-42165594~~chr21:42257950-42259521,
chr21:42163513-42165594~~chr21:42448889-42450963,
chr21:42163547-42165689~~chr21:42257801-42259871,
chr21:42163547-42165689~~chr21:42448762-42450961,
chr21:42163548-42165686~~chr21:42257776-42259795,
chr21:42163548-42165686~~chr21:42449010-42450957,
chr21:42163554-42165689~~chr21:42257870-42259821,
chr21:42163560-42165678~~chr21:42257791-42259828,
chr21:42163560-42165678~~chr21:42448353-42451045,
chr21:42163562-42165662~~chr21:42257753-42259725,
chr21:42163573-42165597~~chr21:42257861-42259727,
chr21:42163578-42165654~~chr21:42257852-42259851,
chr21:42163584-42165421~~chr21:42257930-42259773,
chr21:42163593-42165452~~chr21:42257772-42259645,
chr21:42163594-42165538~~chr21:42257903-42260904,
chr21:42163598-42165460~~chr21:42448798-42450961,
chr21:42163609-42165687~~chr21:42257930-42259659,
chr21:42163609-42165687~~chr21:42276252-42278586,
chr21:42163609-42165687~~chr21:42380859-42382357,
chr21:42163609-42165687~~chr21:42448814-42450934,
chr21:42163637-42165569~~chr21:42257874-42259616,
chr21:42163637-42165569~~chr21:42268874-42270578,
chr21:42163647-42165636~~chr21:42257777-42259668,
chr21:42163649-42165427~~chr21:42257899-42259660,
chr21:42163649-42165427~~chr21:42448856-42450964,
chr21:42163687-42165447~~chr21:42257787-42259818,
chr21:42163697-42165455~~chr21:42257924-42259631,
chr21:42163698-42165607~~chr21:42257794-42259803,
chr21:42163710-42165639~~chr21:42257974-42259612,
chr21:42163727-42165624~~chr21:42257998-42259702,
chr21:42163748-42165476~~chr21:42449061-42450957,
chr21:42163772-42165364~~chr21:42257985-42259687,
chr21:42163782-42165494~~chr21:42257791-42259910,
chr21:42163812-42165464~~chr21:42380774-42382379,
chr21:42163825-42165601~~chr21:42257982-42259586,
chr21:42163825-42165601~~chr21:42832873-42834191,
chr21:42163825-42165615~~chr21:42258014-42259527,
chr21:42163825-42165673~~chr21:42257917-42259640,
chr21:42163825-42165673~~chr21:42319451-42320649,
chr21:42163825-42165673~~chr21:42448823-42451382,
chr21:42163831-42165511~~chr21:42258055-42259516,
chr21:42163847-42165532~~chr21:42257970-42259534,
chr21:42163884-42165279~~chr21:42257979-42259471,
chr21:42163884-42165512~~chr21:42257959-42259585,
chr21:42163919-42165460~~chr21:42258097-42259645,