- Basic information
- CohesinDB ID: CDBP00420262
- Locus: chr21-42182630-42184265
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Data sourse: GSE67783, GSE86191, GSE98367, GSE206145, GSE120943, ENCSR153HNT, ENCSR703TNG, GSE25021
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Cell type: MCF-7, RPE, HCT-116, Monocytes, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 39%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, ZNF621, NME2, XBP1, FOXA1, SUZ12, ZBTB7B, HDGF, ZNF274, ATF3, BMI1, ZBTB5, ZNF444, CBFB, PAX5, CDC5L, MAF, ELF1, TRIM28, BCLAF1, TEAD1, ESR1, OCA2, ZIK1, CTCF, TCF12, JUN, E4F1, KLF1, ZNF157, GATA6, PAX8, DPF2, IRF4, TRIM24, ZNF211, ZNF674, RAD51, ZNF410, ZNF512B, ZNF776, ZNF280A, ZNF175, GTF2F1, EHMT2, TFAP2C, RBPJ, EED, YBX1, GLIS1, POU2F2, NANOG, CHD8, MYCN, POU5F1, TOP2A, RUNX1T1, ZNF263, CTBP1, ZBTB1, ZSCAN21, ZBTB48, ZSCAN5A, ID3, ASH1L, NONO, SRF, MTA2, DDX5, NBN, ARID3A, PHB2, ZNF488, MYC, MCM5, SMARCA4, RFX1, ARID1B, FOXK2, GABPA, ZNF8, STAT3, PRDM14, IKZF1, RCOR1, ZNF639, ARNTL, NR3C1, ESRRA, HNRNPL, CREB1, EZH2, ARHGAP35, GABPB1, SPI1, HES1, IRF1, HDAC2, SSRP1, GATA2, ZNF644, GATAD2B, MXD3, SREBF1, ZNF785, SMARCA5, RELB, NCOA2, RUNX1, CBX1, HDAC1, SIRT6, ZNF707, CRY1, ZFX, SMAD3, TET2, NFXL1, ZNF473, MCM2, TRIM22, ZNF18, ZNF169, OSR2, ZNF184, ZNF280C, ARNT, NFIB, SNIP1, FOS, SUPT5H, MED1, ZNF670, NCOA1, SP1, GSPT2, PHF20, ARID2, REST, HNRNPLL, TCF3, FOXP1, BCOR, SALL1, SMC3, MLLT1, STAG1, ZNF239, TRP47, NCOA4, PPARG, TBL1X, MTA3, EBF1, ZNF207, GTF2B, WT1, ZNF662, ZBTB33, HOXB13, ZKSCAN1, KDM1A, YY1, RELA, TARDBP, NEUROD1, ZNF148, ZNF266, ZNF521, ZNF155, MCM3, SP140, HIF1A, ZNF311, MAF1, GATA1, ZNF143, MTA1, PLAG1, ZFP69B, ZNF592, NCOA3, ZNF544, NR2F1, ZNF791, KDM5B, TP53, PKNOX1, ZNF687, AR, ZBTB40, EGR1, HSF1, IKZF2, BRD4, CLOCK, MAZ, ZSCAN23, ZNF24
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops