- Basic information
- CohesinDB ID: CDBP00420272
- Locus: chr21-42211652-42212396
-
Data sourse: GSE93080, ENCSR000EAC, ENCSR000DZP, GSE67783, ENCSR000BMY, GSE68388, GSE25021, GSE50893
-
Cell type: GM10847, GM2610, GM19240, HSPC, HuCC-T1, GM2630, GM12890, GM2255, GM18486, GM18526, SNYDER, GM18505, GM12878, GM12891, GM2588, GM19239, GM19193, GM19099, GM12892, Hep-G2, GM19238, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.756
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SMC1A, ZSCAN5D, MYCN, ZNF263, ZFX, WT1, ZBTB48, ZSCAN5A, TET2, ZNF318, RELA, ZBTB2, OGG1, MYC, RAD21, PRDM1, SP140, HIF1A, TAL1, CEBPB, TRIM28, CTCF, SPI1, BCL11A, AR, RXR, REST, ZBTB26, BRD4, ZNF512B, STAG1
- Target gene symbol (double-evidenced CRMs): MX1,ABCG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 5
- Related genes and loops