- Basic information
- CohesinDB ID: CDBP00420273
- Locus: chr21-42212688-42213698
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Data sourse: GSE111913, GSE67783, GSE86191
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Cell type: RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 54%,
"14_ReprPCWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, ZSCAN5D, MYCN, ZNF263, ZFX, WT1, ZBTB48, ZSCAN5A, TET2, ZNF318, RELA, ZBTB2, OGG1, MYC, RAD21, PRDM1, SP140, HIF1A, TAL1, CEBPB, TRIM28, CTCF, SPI1, BCL11A, AR, RXR, REST, ZBTB26, BRD4, ZNF512B, STAG1
- Target gene symbol (double-evidenced CRMs): ABCG1,MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 7
- Related genes and loops