- Basic information
- CohesinDB ID: CDBP00420311
- Locus: chr21-42320786-42322135
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Data sourse: GSE206145-GSE177045, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, MCF-7, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 47%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SOX2, HMGN3, XBP1, FOXA1, RBFOX2, PBX2, ZFHX2, TFAP4, HDGF, LYL1, ATF3, ATF4, CBFB, MXD4, MECOM, PAX5, TP63, JMJD1C, INTS11, ELF1, TRIM28, BCLAF1, TEAD1, ETV1, LMO2, ESR1, MLL, CTCF, TCF12, JUN, EP300, KLF1, MNT, GATA6, DPF2, KMT2B, TFAP2C, RBPJ, GLIS1, POU2F2, BRD1, MYCN, ZNF263, RUNX1T1, ID3, POU5F1, CTBP1, ZBTB48, ZSCAN5A, STAT1, GATAD1, ERG2, ARID3A, ERG, PBX1, OGG1, ETS1, MYC, RAD21, GRHL3, NKX2-1, STAT3, XRCC5, PRDM14, IKZF1, NFE2, DNMT3B, NR3C1, CEBPB, ESRRA, SRSF3, KMT2A, CREB1, EZH2, BMPR1A, GRHL2, GABPB1, SPI1, GATA2, INTS13, MXD3, FLI1, HCFC1, NAB2, EP400, NCOA2, RUNX1, SMC1A, BCL6, CEBPA, CBX1, ZFX, TET2, ERG3, RARA, CREBBP, NOTCH1, ZBTB2, RUNX2, ARNT, ZNF48, PRDM9, SMAD4, CBFA2T3, ETV6, PBX3, FOS, CHD1, MED1, ZEB1, TEAD3, MYB, L3MBTL2, EVI1, BCL11A, SP1, NIPBL, NR4A1, ZBTB7A, ZNF605, TCF3, AATF, SMC3, STAG1, MLLT1, SKI, TRP47, CBFA2T2, AGO1, EBF1, SS18, WT1, ESR2, KDM1A, YY1, RELA, TARDBP, BRG1, SP140, ZFP36, TCF4, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, CEBPG, NCOA3, NR2F1, KDM5B, PKNOX1, ZNF334, EGR2, ELF3, BHLHE40, AR, ZBTB16, ZNF579, RXR, EGR1, HEXIM1, HSF1, BRD4, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): TMPRSS2,WDR4,UMODL1,PDE9A,SLC37A1,RSPH1,UBASH3A,TMPRSS3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000184012,
ENSG00000177398,
ENSG00000160183,
ENSG00000160185,
ENSG00000160188,
ENSG00000160190,
ENSG00000160191,
ENSG00000160193,
- Related loop:
chr21:41500000-41525000~~chr21:42300000-42325000,
chr21:42125000-42150000~~chr21:42300000-42325000,
chr21:42150000-42175000~~chr21:42300000-42325000,
chr21:42163825-42165673~~chr21:42319451-42320649,
chr21:42300000-42325000~~chr21:42400000-42425000,
chr21:42300000-42325000~~chr21:42425000-42450000,
chr21:42300000-42325000~~chr21:42450000-42475000,
chr21:42300000-42325000~~chr21:42500000-42525000,
chr21:42300000-42325000~~chr21:42525000-42550000,
chr21:42300000-42325000~~chr21:42550000-42575000,
chr21:42300000-42325000~~chr21:42575000-42600000,
chr21:42300000-42325000~~chr21:42750000-42775000,
chr21:42300000-42325000~~chr21:42775000-42800000,
chr21:42300000-42325000~~chr21:42800000-42825000,
chr21:42300000-42325000~~chr21:42850000-42875000,
chr21:42300000-42325000~~chr21:43275000-43300000,
chr21:42325000-42350000~~chr21:42425000-42450000,
chr21:42325000-42350000~~chr21:42800000-42825000,