- Basic information
- CohesinDB ID: CDBP00420317
- Locus: chr21-42344053-42344672
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 68%,
"14_ReprPCWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, TRP47, FOSL1, BCL6, MYCN, ZNF263, ID3, ZFX, XBP1, ZBTB48, WT1, FOXA1, SUZ12, BCL3, ERG, YY1, RELA, MYC, SP140, ZIC2, GRHL3, ARNT, MAF1, PBX3, STAT3, PRDM14, ZNF143, PLAG1, CBX2, ARNTL, KDM5B, ESR1, TP53, OCA2, GRHL2, USF2, CTCF, JUN, AR, HSF1, MAZ, AATF, ZNF528, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TFF2,UBASH3A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops